Shmulevich I - Search Results

1

Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, Malhotra R, Farshidfar F, Colaprico A, Parker JS, Mose LE, Vo NS, Liu J, Liu Y, Rader J, Dhankani V, Reynolds SM, Bowlby R, Califano A, Cherniack AD, Anastassiou D, Bedognetti D, Mokrab Y, Newman AM, Rao A, Chen K, Krasnitz A, Hu H, Malta TM, Noushmehr H, Pedamallu CS, Bullman S, Ojesina AI, Lamb A, Zhou W, Shen H, Choueiri TK, Weinstein JN, Guinney J, Saltz J, Holt RA, Rabkin CS; Cancer Genome Atlas Research Network; Lazar AJ, Serody JS, Demicco EG, Disis ML, Vincent BG, Shmulevich I. Thorsson V, et al. Among authors: shmulevich i. Immunity. 2018 Apr 17;48(4):812-830.e14. doi: 10.1016/j.immuni.2018.03.023. Epub 2018 Apr 5. Immunity. 2018. PMID: 29628290 Free PMC article.

2

Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.

Shmulevich I, Dougherty ER, Kim S, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Feb;18(2):261-74. doi: 10.1093/bioinformatics/18.2.261. Bioinformatics. 2002. PMID: 11847074

3

Binary analysis and optimization-based normalization of gene expression data.

Shmulevich I, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Apr;18(4):555-65. doi: 10.1093/bioinformatics/18.4.555. Bioinformatics. 2002. PMID: 12016053

4

Gene perturbation and intervention in probabilistic Boolean networks.

Shmulevich I, Dougherty ER, Zhang W. Shmulevich I, et al. Bioinformatics. 2002 Oct;18(10):1319-31. doi: 10.1093/bioinformatics/18.10.1319. Bioinformatics. 2002. PMID: 12376376

5

Data extraction from composite oligonucleotide microarrays.

Shmulevich I, Astola J, Cogdell D, Hamilton SR, Zhang W. Shmulevich I, et al. Nucleic Acids Res. 2003 Apr 1;31(7):e36. doi: 10.1093/nar/gng036. Nucleic Acids Res. 2003. PMID: 12655024 Free PMC article.

6

The role of certain Post classes in Boolean network models of genetic networks.

Shmulevich I, Lähdesmäki H, Dougherty ER, Astola J, Zhang W. Shmulevich I, et al. Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):10734-9. doi: 10.1073/pnas.1534782100. Epub 2003 Sep 8. Proc Natl Acad Sci U S A. 2003. PMID: 12963822 Free PMC article.

7

Growing genetic regulatory networks from seed genes.

Hashimoto RF, Kim S, Shmulevich I, Zhang W, Bittner ML, Dougherty ER. Hashimoto RF, et al. Among authors: shmulevich i. Bioinformatics. 2004 May 22;20(8):1241-7. doi: 10.1093/bioinformatics/bth074. Epub 2004 Feb 10. Bioinformatics. 2004. PMID: 14871865

8

Insulin-like growth factor binding protein 2 promotes ovarian cancer cell invasion.

Lee EJ, Mircean C, Shmulevich I, Wang H, Liu J, Niemistö A, Kavanagh JJ, Lee JH, Zhang W. Lee EJ, et al. Among authors: shmulevich i. Mol Cancer. 2005 Feb 2;4(1):7. doi: 10.1186/1476-4598-4-7. Mol Cancer. 2005. PMID: 15686601 Free PMC article.

9

Inference of Boolean networks using sensitivity regularization.

Liu W, Lähdesmäki H, Dougherty ER, Shmulevich I. Liu W, et al. Among authors: shmulevich i. EURASIP J Bioinform Syst Biol. 2008;2008(1):780541. doi: 10.1155/2008/780541. EURASIP J Bioinform Syst Biol. 2008. PMID: 18604289 Free PMC article.

10

Steady-state analysis of genetic regulatory networks modelled by probabilistic boolean networks.

Shmulevich I, Gluhovsky I, Hashimoto RF, Dougherty ER, Zhang W. Shmulevich I, et al. Comp Funct Genomics. 2003;4(6):601-8. doi: 10.1002/cfg.342. Comp Funct Genomics. 2003. PMID: 18629023 Free PMC article.

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