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Earth BioGenome Project: Sequencing life for the future of life.
Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, Johnson WE, Patrinos A, Richards S, Castilla-Rubio JC, van Sluys MA, Soltis PS, Xu X, Yang H, Zhang G. Lewin HA, et al. Among authors: xu x. Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4325-4333. doi: 10.1073/pnas.1720115115. Proc Natl Acad Sci U S A. 2018. PMID: 29686065 Free PMC article.
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm.
Hou Y, Song L, Zhu P, Zhang B, Tao Y, Xu X, Li F, Wu K, Liang J, Shao D, Wu H, Ye X, Ye C, Wu R, Jian M, Chen Y, Xie W, Zhang R, Chen L, Liu X, Yao X, Zheng H, Yu C, Li Q, Gong Z, Mao M, Yang X, Yang L, Li J, Wang W, Lu Z, Gu N, Laurie G, Bolund L, Kristiansen K, Wang J, Yang H, Li Y, Zhang X, Wang J. Hou Y, et al. Among authors: xu x. Cell. 2012 Mar 2;148(5):873-85. doi: 10.1016/j.cell.2012.02.028. Cell. 2012. PMID: 22385957 Free article.
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).
Dong Y, Xie M, Jiang Y, Xiao N, Du X, Zhang W, Tosser-Klopp G, Wang J, Yang S, Liang J, Chen W, Chen J, Zeng P, Hou Y, Bian C, Pan S, Li Y, Liu X, Wang W, Servin B, Sayre B, Zhu B, Sweeney D, Moore R, Nie W, Shen Y, Zhao R, Zhang G, Li J, Faraut T, Womack J, Zhang Y, Kijas J, Cockett N, Xu X, Zhao S, Wang J, Wang W. Dong Y, et al. Among authors: xu x. Nat Biotechnol. 2013 Feb;31(2):135-41. doi: 10.1038/nbt.2478. Epub 2012 Dec 23. Nat Biotechnol. 2013. PMID: 23263233
Deep whole-genome sequencing of 90 Han Chinese genomes.
Lan T, Lin H, Zhu W, Laurent TCAM, Yang M, Liu X, Wang J, Wang J, Yang H, Xu X, Guo X. Lan T, et al. Among authors: xu x. Gigascience. 2017 Sep 1;6(9):1-7. doi: 10.1093/gigascience/gix067. Gigascience. 2017. PMID: 28938720 Free PMC article.
10KP: A phylodiverse genome sequencing plan.
Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, Liu X, Xu X, Wong GK. Cheng S, et al. Among authors: xu x. Gigascience. 2018 Mar 1;7(3):1-9. doi: 10.1093/gigascience/giy013. Gigascience. 2018. PMID: 29618049 Free PMC article.
The metagenome of the female upper reproductive tract.
Li F, Chen C, Wei W, Wang Z, Dai J, Hao L, Song L, Zhang X, Zeng L, Du H, Tang H, Liu N, Yang H, Wang J, Madsen L, Brix S, Kristiansen K, Xu X, Li J, Wu R, Jia H. Li F, et al. Among authors: xu x. Gigascience. 2018 Oct 1;7(10):giy107. doi: 10.1093/gigascience/giy107. Gigascience. 2018. PMID: 30192933 Free PMC article.
Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform.
Li Q, Zhao X, Zhang W, Wang L, Wang J, Xu D, Mei Z, Liu Q, Du S, Li Z, Liang X, Wang X, Wei H, Liu P, Zou J, Shen H, Chen A, Drmanac S, Liu JS, Li L, Jiang H, Zhang Y, Wang J, Yang H, Xu X, Drmanac R, Jiang Y. Li Q, et al. Among authors: xu d, xu x. BMC Genomics. 2019 Mar 13;20(1):215. doi: 10.1186/s12864-019-5569-5. BMC Genomics. 2019. PMID: 30866797 Free PMC article.
PIRD: Pan Immune Repertoire Database.
Zhang W, Wang L, Liu K, Wei X, Yang K, Du W, Wang S, Guo N, Ma C, Luo L, Wu J, Lin L, Yang F, Gao F, Wang X, Li T, Zhang R, Saksena NK, Yang H, Wang J, Fang L, Hou Y, Xu X, Liu X. Zhang W, et al. Among authors: xu x. Bioinformatics. 2020 Feb 1;36(3):897-903. doi: 10.1093/bioinformatics/btz614. Bioinformatics. 2020. PMID: 31373607
Lineage-specific evolution of mangrove plastid genomes.
Han K, Shi C, Li L, Seim I, Lee SM, Xu X, Yang H, Fan G, Liu X. Han K, et al. Among authors: xu x. Plant Genome. 2020 Jul;13(2):e20019. doi: 10.1002/tpg2.20019. Epub 2020 Apr 21. Plant Genome. 2020. PMID: 33016609 Free article.
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