Cox J - Search Results

1

BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes.

Meier F, Geyer PE, Virreira Winter S, Cox J, Mann M. Meier F, et al. Among authors: cox j. Nat Methods. 2018 Jun;15(6):440-448. doi: 10.1038/s41592-018-0003-5. Epub 2018 May 7. Nat Methods. 2018. PMID: 29735998

2

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites.

Gnad F, Ren S, Cox J, Olsen JV, Macek B, Oroshi M, Mann M. Gnad F, et al. Among authors: cox j. Genome Biol. 2007;8(11):R250. doi: 10.1186/gb-2007-8-11-r250. Genome Biol. 2007. PMID: 18039369 Free PMC article.

3

Super-SILAC mix for quantitative proteomics of human tumor tissue.

Geiger T, Cox J, Ostasiewicz P, Wisniewski JR, Mann M. Geiger T, et al. Among authors: cox j. Nat Methods. 2010 May;7(5):383-5. doi: 10.1038/nmeth.1446. Epub 2010 Apr 4. Nat Methods. 2010. PMID: 20364148

4

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation.

Geiger T, Cox J, Mann M. Geiger T, et al. Among authors: cox j. Mol Cell Proteomics. 2010 Oct;9(10):2252-61. doi: 10.1074/mcp.M110.001537. Epub 2010 Jul 7. Mol Cell Proteomics. 2010. PMID: 20610777 Free PMC article.

5

Proteomic changes resulting from gene copy number variations in cancer cells.

Geiger T, Cox J, Mann M. Geiger T, et al. Among authors: cox j. PLoS Genet. 2010 Sep 2;6(9):e1001090. doi: 10.1371/journal.pgen.1001090. PLoS Genet. 2010. PMID: 20824076 Free PMC article.

6

Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.

Nagaraj N, D'Souza RC, Cox J, Olsen JV, Mann M. Nagaraj N, et al. Among authors: cox j. J Proteome Res. 2010 Dec 3;9(12):6786-94. doi: 10.1021/pr100637q. Epub 2010 Oct 26. J Proteome Res. 2010. PMID: 20873877

7

Defining the transcriptome and proteome in three functionally different human cell lines.

Lundberg E, Fagerberg L, Klevebring D, Matic I, Geiger T, Cox J, Algenäs C, Lundeberg J, Mann M, Uhlen M. Lundberg E, et al. Among authors: cox j. Mol Syst Biol. 2010 Dec 21;6:450. doi: 10.1038/msb.2010.106. Mol Syst Biol. 2010. PMID: 21179022 Free PMC article.

8

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics.

Geiger T, Wisniewski JR, Cox J, Zanivan S, Kruger M, Ishihama Y, Mann M. Geiger T, et al. Among authors: cox j. Nat Protoc. 2011 Feb;6(2):147-57. doi: 10.1038/nprot.2010.192. Nat Protoc. 2011. PMID: 21293456

9

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

Michalski A, Cox J, Mann M. Michalski A, et al. Among authors: cox j. J Proteome Res. 2011 Apr 1;10(4):1785-93. doi: 10.1021/pr101060v. Epub 2011 Feb 28. J Proteome Res. 2011. PMID: 21309581

10

Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.

Thakur SS, Geiger T, Chatterjee B, Bandilla P, Fröhlich F, Cox J, Mann M. Thakur SS, et al. Among authors: cox j. Mol Cell Proteomics. 2011 Aug;10(8):M110.003699. doi: 10.1074/mcp.M110.003699. Epub 2011 May 17. Mol Cell Proteomics. 2011. PMID: 21586754 Free PMC article.

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