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Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.
Ma L, Chen Z, Huang da W, Kutty G, Ishihara M, Wang H, Abouelleil A, Bishop L, Davey E, Deng R, Deng X, Fan L, Fantoni G, Fitzgerald M, Gogineni E, Goldberg JM, Handley G, Hu X, Huber C, Jiao X, Jones K, Levin JZ, Liu Y, Macdonald P, Melnikov A, Raley C, Sassi M, Sherman BT, Song X, Sykes S, Tran B, Walsh L, Xia Y, Yang J, Young S, Zeng Q, Zheng X, Stephens R, Nusbaum C, Birren BW, Azadi P, Lempicki RA, Cuomo CA, Kovacs JA. Ma L, et al. Among authors: liu y. Nat Commun. 2016 Feb 22;7:10740. doi: 10.1038/ncomms10740. Nat Commun. 2016. PMID: 26899007 Free PMC article.
Inability to Culture Pneumocystis jirovecii.
Liu Y, Fahle GA, Kovacs JA. Liu Y, et al. mBio. 2018 Jun 12;9(3):e00939-18. doi: 10.1128/mBio.00939-18. mBio. 2018. PMID: 29895638 Free PMC article. No abstract available.
Diversity and Complexity of the Large Surface Protein Family in the Compacted Genomes of Multiple Pneumocystis Species.
Ma L, Chen Z, Huang DW, Cissé OH, Rothenburger JL, Latinne A, Bishop L, Blair R, Brenchley JM, Chabé M, Deng X, Hirsch V, Keesler R, Kutty G, Liu Y, Margolis D, Morand S, Pahar B, Peng L, Van Rompay KKA, Song X, Song J, Sukura A, Thapar S, Wang H, Weissenbacher-Lang C, Xu J, Lee CH, Jardine C, Lempicki RA, Cushion MT, Cuomo CA, Kovacs JA. Ma L, et al. Among authors: liu y. mBio. 2020 Mar 3;11(2):e02878-19. doi: 10.1128/mBio.02878-19. mBio. 2020. PMID: 32127451 Free PMC article.
Genomic insights into the host specific adaptation of the Pneumocystis genus.
Cissé OH, Ma L, Dekker JP, Khil PP, Youn JH, Brenchley JM, Blair R, Pahar B, Chabé M, Van Rompay KKA, Keesler R, Sukura A, Hirsch V, Kutty G, Liu Y, Peng L, Chen J, Song J, Weissenbacher-Lang C, Xu J, Upham NS, Stajich JE, Cuomo CA, Cushion MT, Kovacs JA. Cissé OH, et al. Among authors: liu y. Commun Biol. 2021 Mar 8;4(1):305. doi: 10.1038/s42003-021-01799-7. Commun Biol. 2021. PMID: 33686174 Free PMC article.
The Host Adapted Fungal Pathogens of Pneumocystis Genus Utilize Genic Regional Centromeres.
Cissé OH, Curran S, Folco HD, Liu Y, Bishop L, Wang H, Fischer ER, Davis AS, Babb-Biernacki S, Doyle VP, Richards JK, Hassan SA, Dekker JP, Khil PP, Brenchley JM, Grewal S, Cushion M, Ma L, Kovacs JA. Cissé OH, et al. Among authors: liu y. bioRxiv [Preprint]. 2023 May 12:2023.05.12.540427. doi: 10.1101/2023.05.12.540427. bioRxiv. 2023. Update in: mBio. 2024 Mar 13;15(3):e0318523. doi: 10.1128/mbio.03185-23 PMID: 37425787 Free PMC article. Updated. Preprint.
Regional centromere configuration in the fungal pathogens of the Pneumocystis genus.
Cissé OH, Curran SJ, Folco HD, Liu Y, Bishop L, Wang H, Fischer ER, Davis AS, Combs C, Thapar S, Dekker JP, Grewal S, Cushion M, Ma L, Kovacs JA. Cissé OH, et al. Among authors: liu y. mBio. 2024 Mar 13;15(3):e0318523. doi: 10.1128/mbio.03185-23. Epub 2024 Feb 21. mBio. 2024. PMID: 38380929 Free PMC article.
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