Parca L - Search Results

1

Kinome-wide identification of phosphorylation networks in eukaryotic proteomes.

Parca L, Ariano B, Cabibbo A, Paoletti M, Tamburrini A, Palmeri A, Ausiello G, Helmer-Citterich M. Parca L, et al. Bioinformatics. 2019 Feb 1;35(3):372-379. doi: 10.1093/bioinformatics/bty545. Bioinformatics. 2019. PMID: 30016513 Free PMC article.

2

Phosphate binding sites identification in protein structures.

Parca L, Gherardini PF, Helmer-Citterich M, Ausiello G. Parca L, et al. Nucleic Acids Res. 2011 Mar;39(4):1231-42. doi: 10.1093/nar/gkq987. Epub 2010 Oct 24. Nucleic Acids Res. 2011. PMID: 20974634 Free PMC article.

3

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures.

Parca L, Mangone I, Gherardini PF, Ausiello G, Helmer-Citterich M. Parca L, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W278-82. doi: 10.1093/nar/gkr389. Epub 2011 May 26. Nucleic Acids Res. 2011. PMID: 21622655 Free PMC article.

4

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures.

Parca L, Ferré F, Ausiello G, Helmer-Citterich M. Parca L, et al. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W281-5. doi: 10.1093/nar/gkt390. Epub 2013 May 22. Nucleic Acids Res. 2013. PMID: 23703207 Free PMC article.

5

Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity.

Parca L, Gherardini PF, Truglio M, Mangone I, Ferrè F, Helmer-Citterich M, Ausiello G. Parca L, et al. PLoS One. 2012;7(11):e50240. doi: 10.1371/journal.pone.0050240. Epub 2012 Nov 27. PLoS One. 2012. PMID: 23209685 Free PMC article.

6

Discovering sequence and structure landscapes in RNA interaction motifs.

Adinolfi M, Pietrosanto M, Parca L, Ausiello G, Ferrè F, Helmer-Citterich M. Adinolfi M, et al. Among authors: parca l. Nucleic Acids Res. 2019 Jun 4;47(10):4958-4969. doi: 10.1093/nar/gkz250. Nucleic Acids Res. 2019. PMID: 31162604 Free PMC article.

7

Modeling cancer drug response through drug-specific informative genes.

Parca L, Pepe G, Pietrosanto M, Galvan G, Galli L, Palmeri A, Sciandrone M, Ferrè F, Ausiello G, Helmer-Citterich M. Parca L, et al. Sci Rep. 2019 Oct 23;9(1):15222. doi: 10.1038/s41598-019-50720-0. Sci Rep. 2019. PMID: 31645597 Free PMC article.

8

Variation in the co-expression profile highlights a loss of miRNA-mRNA regulation in multiple cancer types.

Pepe G, Parca L, Viviani L, Ausiello G, Helmer-Citterich M. Pepe G, et al. Among authors: parca l. Noncoding RNA Res. 2022 Mar 19;7(2):98-105. doi: 10.1016/j.ncrna.2022.03.003. eCollection 2022 Jun. Noncoding RNA Res. 2022. PMID: 35387279 Free PMC article.

9

Evaluation of potential miRNA sponge effects of SARS genomes in human.

Pepe G, Guarracino A, Ballesio F, Parca L, Ausiello G, Helmer-Citterich M. Pepe G, et al. Among authors: parca l. Noncoding RNA Res. 2022 Mar;7(1):48-53. doi: 10.1016/j.ncrna.2022.01.003. Epub 2022 Jan 20. Noncoding RNA Res. 2022. PMID: 35075440 Free PMC article.

10

Dissecting the Genome for Drug Response Prediction.

Pepe G, Carrino C, Parca L, Helmer-Citterich M. Pepe G, et al. Among authors: parca l. Methods Mol Biol. 2022;2449:187-196. doi: 10.1007/978-1-0716-2095-3_7. Methods Mol Biol. 2022. PMID: 35507263 Review.

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