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Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency.
Rulands S, Lee HJ, Clark SJ, Angermueller C, Smallwood SA, Krueger F, Mohammed H, Dean W, Nichols J, Rugg-Gunn P, Kelsey G, Stegle O, Simons BD, Reik W. Rulands S, et al. Among authors: stegle o. Cell Syst. 2018 Jul 25;7(1):63-76.e12. doi: 10.1016/j.cels.2018.06.012. Cell Syst. 2018. PMID: 30031774 Free PMC article.
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.
Dubin MJ, Zhang P, Meng D, Remigereau MS, Osborne EJ, Paolo Casale F, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, Rätsch G, Stegle O, Clark RM, Nordborg M. Dubin MJ, et al. Among authors: stegle o. Elife. 2015 May 5;4:e05255. doi: 10.7554/eLife.05255. Elife. 2015. PMID: 25939354 Free PMC article.
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity.
Angermueller C, Clark SJ, Lee HJ, Macaulay IC, Teng MJ, Hu TX, Krueger F, Smallwood S, Ponting CP, Voet T, Kelsey G, Stegle O, Reik W. Angermueller C, et al. Among authors: stegle o. Nat Methods. 2016 Mar;13(3):229-232. doi: 10.1038/nmeth.3728. Epub 2016 Jan 11. Nat Methods. 2016. PMID: 26752769 Free PMC article.
Deep learning for computational biology.
Angermueller C, Pärnamaa T, Parts L, Stegle O. Angermueller C, et al. Among authors: stegle o. Mol Syst Biol. 2016 Jul 29;12(7):878. doi: 10.15252/msb.20156651. Mol Syst Biol. 2016. PMID: 27474269 Free PMC article. Review.
Multi-tissue DNA methylation age predictor in mouse.
Stubbs TM, Bonder MJ, Stark AK, Krueger F; BI Ageing Clock Team; von Meyenn F, Stegle O, Reik W. Stubbs TM, et al. Among authors: stegle o. Genome Biol. 2017 Apr 11;18(1):68. doi: 10.1186/s13059-017-1203-5. Genome Biol. 2017. PMID: 28399939 Free PMC article.
DNA methylation defines regional identity of human intestinal epithelial organoids and undergoes dynamic changes during development.
Kraiczy J, Nayak KM, Howell KJ, Ross A, Forbester J, Salvestrini C, Mustata R, Perkins S, Andersson-Rolf A, Leenen E, Liebert A, Vallier L, Rosenstiel PC, Stegle O, Dougan G, Heuschkel R, Koo BK, Zilbauer M. Kraiczy J, et al. Among authors: stegle o. Gut. 2019 Jan;68(1):49-61. doi: 10.1136/gutjnl-2017-314817. Epub 2017 Nov 15. Gut. 2019. PMID: 29141958 Free PMC article.
221 results