Kouza M - Search Results

1

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models.

Kmiecik S, Kouza M, Badaczewska-Dawid AE, Kloczkowski A, Kolinski A. Kmiecik S, et al. Among authors: kouza m. Int J Mol Sci. 2018 Nov 6;19(11):3496. doi: 10.3390/ijms19113496. Int J Mol Sci. 2018. PMID: 30404229 Free PMC article. Review.

2

From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A.

Kmiecik S, Gront D, Kouza M, Kolinski A. Kmiecik S, et al. Among authors: kouza m. J Phys Chem B. 2012 Jun 14;116(23):7026-32. doi: 10.1021/jp301720w. Epub 2012 Apr 19. J Phys Chem B. 2012. PMID: 22486297

3

Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics.

Wabik J, Kmiecik S, Gront D, Kouza M, Koliński A. Wabik J, et al. Among authors: kouza m. Int J Mol Sci. 2013 May 10;14(5):9893-905. doi: 10.3390/ijms14059893. Int J Mol Sci. 2013. PMID: 23665897 Free PMC article.

4

Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.

Blaszczyk M, Kurcinski M, Kouza M, Wieteska L, Debinski A, Kolinski A, Kmiecik S. Blaszczyk M, et al. Among authors: kouza m. Methods. 2016 Jan 15;93:72-83. doi: 10.1016/j.ymeth.2015.07.004. Epub 2015 Jul 10. Methods. 2016. PMID: 26165956 Free article.

5

Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible model.

Kouza M, Banerji A, Kolinski A, Buhimschi IA, Kloczkowski A. Kouza M, et al. Phys Chem Chem Phys. 2017 Jan 25;19(4):2990-2999. doi: 10.1039/c6cp07145g. Phys Chem Chem Phys. 2017. PMID: 28079198 Free PMC article.

6

Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational study.

Kouza M, Co NT, Li MS, Kmiecik S, Kolinski A, Kloczkowski A, Buhimschi IA. Kouza M, et al. J Chem Phys. 2018 Jun 7;148(21):215106. doi: 10.1063/1.5028575. J Chem Phys. 2018. PMID: 29884031 Free PMC article.

7

Role of Resultant Dipole Moment in Mechanical Dissociation of Biological Complexes.

Kouza M, Banerji A, Kolinski A, Buhimschi I, Kloczkowski A. Kouza M, et al. Molecules. 2018 Aug 10;23(8):1995. doi: 10.3390/molecules23081995. Molecules. 2018. PMID: 30103417 Free PMC article.

8

A topological order parameter for describing folding free energy landscapes of proteins.

Lan PD, Kouza M, Kloczkowski A, Li MS. Lan PD, et al. Among authors: kouza m. J Chem Phys. 2018 Nov 7;149(17):175101. doi: 10.1063/1.5050483. J Chem Phys. 2018. PMID: 30408975

9

A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain.

Kouza M, Hu CK, Li MS, Kolinski A. Kouza M, et al. J Chem Phys. 2013 Aug 14;139(6):065103. doi: 10.1063/1.4817773. J Chem Phys. 2013. PMID: 23947893

10

The GOR Method of Protein Secondary Structure Prediction and Its Application as a Protein Aggregation Prediction Tool.

Kouza M, Faraggi E, Kolinski A, Kloczkowski A. Kouza M, et al. Methods Mol Biol. 2017;1484:7-24. doi: 10.1007/978-1-4939-6406-2_2. Methods Mol Biol. 2017. PMID: 27787816

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