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T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide-MHC complexes.
Bentzen AK, Such L, Jensen KK, Marquard AM, Jessen LE, Miller NJ, Church CD, Lyngaa R, Koelle DM, Becker JC, Linnemann C, Schumacher TNM, Marcatili P, Nghiem P, Nielsen M, Hadrup SR. Bentzen AK, et al. Among authors: nielsen m. Nat Biotechnol. 2018 Nov 19:10.1038/nbt.4303. doi: 10.1038/nbt.4303. Online ahead of print. Nat Biotechnol. 2018. PMID: 30451992 Free PMC article.
LYRA, a webserver for lymphocyte receptor structural modeling.
Klausen MS, Anderson MV, Jespersen MC, Nielsen M, Marcatili P. Klausen MS, et al. Among authors: nielsen m. Nucleic Acids Res. 2015 Jul 1;43(W1):W349-55. doi: 10.1093/nar/gkv535. Epub 2015 May 24. Nucleic Acids Res. 2015. PMID: 26007650 Free PMC article.
Prediction of Antibody Epitopes.
Nielsen M, Marcatili P. Nielsen M, et al. Methods Mol Biol. 2015;1348:23-32. doi: 10.1007/978-1-4939-2999-3_4. Methods Mol Biol. 2015. PMID: 26424260
MuPeXI: prediction of neo-epitopes from tumor sequencing data.
Bjerregaard AM, Nielsen M, Hadrup SR, Szallasi Z, Eklund AC. Bjerregaard AM, et al. Among authors: nielsen m. Cancer Immunol Immunother. 2017 Sep;66(9):1123-1130. doi: 10.1007/s00262-017-2001-3. Epub 2017 Apr 20. Cancer Immunol Immunother. 2017. PMID: 28429069 Free PMC article.
An Analysis of Natural T Cell Responses to Predicted Tumor Neoepitopes.
Bjerregaard AM, Nielsen M, Jurtz V, Barra CM, Hadrup SR, Szallasi Z, Eklund AC. Bjerregaard AM, et al. Among authors: nielsen m. Front Immunol. 2017 Nov 15;8:1566. doi: 10.3389/fimmu.2017.01566. eCollection 2017. Front Immunol. 2017. PMID: 29187854 Free PMC article.
4,645 results