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Page 1
Predicting the mutations generated by repair of Cas9-induced double-strand breaks.
Allen F, Crepaldi L, Alsinet C, Strong AJ, Kleshchevnikov V, De Angeli P, Páleníková P, Khodak A, Kiselev V, Kosicki M, Bassett AR, Harding H, Galanty Y, Muñoz-Martínez F, Metzakopian E, Jackson SP, Parts L. Allen F, et al. Among authors: kleshchevnikov v. Nat Biotechnol. 2018 Nov 27:10.1038/nbt.4317. doi: 10.1038/nbt.4317. Online ahead of print. Nat Biotechnol. 2018. PMID: 30480667 Free PMC article.
Cell2location maps fine-grained cell types in spatial transcriptomics.
Kleshchevnikov V, Shmatko A, Dann E, Aivazidis A, King HW, Li T, Elmentaite R, Lomakin A, Kedlian V, Gayoso A, Jain MS, Park JS, Ramona L, Tuck E, Arutyunyan A, Vento-Tormo R, Gerstung M, James L, Stegle O, Bayraktar OA. Kleshchevnikov V, et al. Nat Biotechnol. 2022 May;40(5):661-671. doi: 10.1038/s41587-021-01139-4. Epub 2022 Jan 13. Nat Biotechnol. 2022. PMID: 35027729
Cells of the human intestinal tract mapped across space and time.
Elmentaite R, Kumasaka N, Roberts K, Fleming A, Dann E, King HW, Kleshchevnikov V, Dabrowska M, Pritchard S, Bolt L, Vieira SF, Mamanova L, Huang N, Perrone F, Goh Kai'En I, Lisgo SN, Katan M, Leonard S, Oliver TRW, Hook CE, Nayak K, Campos LS, Domínguez Conde C, Stephenson E, Engelbert J, Botting RA, Polanski K, van Dongen S, Patel M, Morgan MD, Marioni JC, Bayraktar OA, Meyer KB, He X, Barker RA, Uhlig HH, Mahbubani KT, Saeb-Parsy K, Zilbauer M, Clatworthy MR, Haniffa M, James KR, Teichmann SA. Elmentaite R, et al. Among authors: kleshchevnikov v. Nature. 2021 Sep;597(7875):250-255. doi: 10.1038/s41586-021-03852-1. Epub 2021 Sep 8. Nature. 2021. PMID: 34497389 Free PMC article.
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro.
Garcia-Alonso L, Handfield LF, Roberts K, Nikolakopoulou K, Fernando RC, Gardner L, Woodhams B, Arutyunyan A, Polanski K, Hoo R, Sancho-Serra C, Li T, Kwakwa K, Tuck E, Lorenzi V, Massalha H, Prete M, Kleshchevnikov V, Tarkowska A, Porter T, Mazzeo CI, van Dongen S, Dabrowska M, Vaskivskyi V, Mahbubani KT, Park JE, Jimenez-Linan M, Campos L, Kiselev VY, Lindskog C, Ayuk P, Prigmore E, Stratton MR, Saeb-Parsy K, Moffett A, Moore L, Bayraktar OA, Teichmann SA, Turco MY, Vento-Tormo R. Garcia-Alonso L, et al. Among authors: kleshchevnikov v. Nat Genet. 2021 Dec;53(12):1698-1711. doi: 10.1038/s41588-021-00972-2. Epub 2021 Dec 2. Nat Genet. 2021. PMID: 34857954 Free PMC article.
A Python library for probabilistic analysis of single-cell omics data.
Gayoso A, Lopez R, Xing G, Boyeau P, Valiollah Pour Amiri V, Hong J, Wu K, Jayasuriya M, Mehlman E, Langevin M, Liu Y, Samaran J, Misrachi G, Nazaret A, Clivio O, Xu C, Ashuach T, Gabitto M, Lotfollahi M, Svensson V, da Veiga Beltrame E, Kleshchevnikov V, Talavera-López C, Pachter L, Theis FJ, Streets A, Jordan MI, Regier J, Yosef N. Gayoso A, et al. Among authors: kleshchevnikov v. Nat Biotechnol. 2022 Feb;40(2):163-166. doi: 10.1038/s41587-021-01206-w. Nat Biotechnol. 2022. PMID: 35132262 No abstract available.
Spatial genomics maps the structure, nature and evolution of cancer clones.
Lomakin A, Svedlund J, Strell C, Gataric M, Shmatko A, Rukhovich G, Park JS, Ju YS, Dentro S, Kleshchevnikov V, Vaskivskyi V, Li T, Bayraktar OA, Pinder S, Richardson AL, Santagata S, Campbell PJ, Russnes H, Gerstung M, Nilsson M, Yates LR. Lomakin A, et al. Among authors: kleshchevnikov v. Nature. 2022 Nov;611(7936):594-602. doi: 10.1038/s41586-022-05425-2. Epub 2022 Nov 9. Nature. 2022. PMID: 36352222 Free PMC article.
Author Correction: Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro.
Garcia-Alonso L, Handfield LF, Roberts K, Nikolakopoulou K, Fernando RC, Gardner L, Woodhams B, Arutyunyan A, Polanski K, Hoo R, Sancho-Serra C, Li T, Kwakwa K, Tuck E, Lorenzi V, Massalha H, Prete M, Kleshchevnikov V, Tarkowska A, Porter T, Mazzeo CI, van Dongen S, Dabrowska M, Vaskivskyi V, Mahbubani KT, Park JE, Jimenez-Linan M, Campos L, Kiselev VY, Lindskog C, Ayuk P, Prigmore E, Stratton MR, Saeb-Parsy K, Moffett A, Moore L, Bayraktar OA, Teichmann SA, Turco MY, Vento-Tormo R. Garcia-Alonso L, et al. Among authors: kleshchevnikov v. Nat Genet. 2023 Jan;55(1):165. doi: 10.1038/s41588-022-01287-6. Nat Genet. 2023. PMID: 36539619 Free PMC article. No abstract available.
A human embryonic limb cell atlas resolved in space and time.
Zhang B, He P, Lawrence JEG, Wang S, Tuck E, Williams BA, Roberts K, Kleshchevnikov V, Mamanova L, Bolt L, Polanski K, Li T, Elmentaite R, Fasouli ES, Prete M, He X, Yayon N, Fu Y, Yang H, Liang C, Zhang H, Blain R, Chedotal A, FitzPatrick DR, Firth H, Dean A, Bayraktar OA, Marioni JC, Barker RA, Storer MA, Wold BJ, Zhang H, Teichmann SA. Zhang B, et al. Among authors: kleshchevnikov v. Nature. 2024 Nov;635(8039):668-678. doi: 10.1038/s41586-023-06806-x. Epub 2023 Dec 6. Nature. 2024. PMID: 38057666 Free PMC article.
Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map.
Bayraktar OA, Bartels T, Holmqvist S, Kleshchevnikov V, Martirosyan A, Polioudakis D, Ben Haim L, Young AMH, Batiuk MY, Prakash K, Brown A, Roberts K, Paredes MF, Kawaguchi R, Stockley JH, Sabeur K, Chang SM, Huang E, Hutchinson P, Ullian EM, Hemberg M, Coppola G, Holt MG, Geschwind DH, Rowitch DH. Bayraktar OA, et al. Among authors: kleshchevnikov v. Nat Neurosci. 2020 Apr;23(4):500-509. doi: 10.1038/s41593-020-0602-1. Epub 2020 Mar 16. Nat Neurosci. 2020. PMID: 32203496 Free PMC article.
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche.
Madissoon E, Oliver AJ, Kleshchevnikov V, Wilbrey-Clark A, Polanski K, Richoz N, Ribeiro Orsi A, Mamanova L, Bolt L, Elmentaite R, Pett JP, Huang N, Xu C, He P, Dabrowska M, Pritchard S, Tuck L, Prigmore E, Perera S, Knights A, Oszlanczi A, Hunter A, Vieira SF, Patel M, Lindeboom RGH, Campos LS, Matsuo K, Nakayama T, Yoshida M, Worlock KB, Nikolić MZ, Georgakopoulos N, Mahbubani KT, Saeb-Parsy K, Bayraktar OA, Clatworthy MR, Stegle O, Kumasaka N, Teichmann SA, Meyer KB. Madissoon E, et al. Among authors: kleshchevnikov v. Nat Genet. 2023 Jan;55(1):66-77. doi: 10.1038/s41588-022-01243-4. Epub 2022 Dec 21. Nat Genet. 2023. PMID: 36543915 Free PMC article.
15 results