Song L - Search Results

1

Transcriptome and epigenome landscape of human cortical development modeled in organoids.

Amiri A, Coppola G, Scuderi S, Wu F, Roychowdhury T, Liu F, Pochareddy S, Shin Y, Safi A, Song L, Zhu Y, Sousa AMM; PsychENCODE Consortium; Gerstein M, Crawford GE, Sestan N, Abyzov A, Vaccarino FM. Amiri A, et al. Among authors: song l. Science. 2018 Dec 14;362(6420):eaat6720. doi: 10.1126/science.aat6720. Science. 2018. PMID: 30545853 Free PMC article.

2

DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells.

Song L, Crawford GE. Song L, et al. Cold Spring Harb Protoc. 2010 Feb;2010(2):pdb.prot5384. doi: 10.1101/pdb.prot5384. Cold Spring Harb Protoc. 2010. PMID: 20150147 Free PMC article. No abstract available.

3

Heritable individual-specific and allele-specific chromatin signatures in humans.

McDaniell R, Lee BK, Song L, Liu Z, Boyle AP, Erdos MR, Scott LJ, Morken MA, Kucera KS, Battenhouse A, Keefe D, Collins FS, Willard HF, Lieb JD, Furey TS, Crawford GE, Iyer VR, Birney E. McDaniell R, et al. Among authors: song l. Science. 2010 Apr 9;328(5975):235-9. doi: 10.1126/science.1184655. Epub 2010 Mar 18. Science. 2010. PMID: 20299549 Free PMC article.

4

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE. Shibata Y, et al. Among authors: song l. PLoS Genet. 2012 Jun;8(6):e1002789. doi: 10.1371/journal.pgen.1002789. Epub 2012 Jun 28. PLoS Genet. 2012. PMID: 22761590 Free PMC article.

5

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.

Sheffield NC, Thurman RE, Song L, Safi A, Stamatoyannopoulos JA, Lenhard B, Crawford GE, Furey TS. Sheffield NC, et al. Among authors: song l. Genome Res. 2013 May;23(5):777-88. doi: 10.1101/gr.152140.112. Epub 2013 Mar 12. Genome Res. 2013. PMID: 23482648 Free PMC article.

6

A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity.

Zhang B, Day DS, Ho JW, Song L, Cao J, Christodoulou D, Seidman JG, Crawford GE, Park PJ, Pu WT. Zhang B, et al. Among authors: song l. Genome Res. 2013 Jun;23(6):917-27. doi: 10.1101/gr.149674.112. Epub 2013 Apr 1. Genome Res. 2013. PMID: 23547170 Free PMC article.

7

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types.

Winter DR, Song L, Mukherjee S, Furey TS, Crawford GE. Winter DR, et al. Among authors: song l. Genome Res. 2013 Jul;23(7):1118-29. doi: 10.1101/gr.150482.112. Epub 2013 May 8. Genome Res. 2013. PMID: 23657885 Free PMC article.

8

Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency.

Factor DC, Corradin O, Zentner GE, Saiakhova A, Song L, Chenoweth JG, McKay RD, Crawford GE, Scacheri PC, Tesar PJ. Factor DC, et al. Among authors: song l. Cell Stem Cell. 2014 Jun 5;14(6):854-63. doi: 10.1016/j.stem.2014.05.005. Cell Stem Cell. 2014. PMID: 24905169 Free PMC article.

9

Open chromatin mapping identifies transcriptional networks regulating human epididymis epithelial function.

Browne JA, Yang R, Song L, Crawford GE, Leir SH, Harris A. Browne JA, et al. Among authors: song l. Mol Hum Reprod. 2014 Dec;20(12):1198-207. doi: 10.1093/molehr/gau075. Epub 2014 Sep 1. Mol Hum Reprod. 2014. PMID: 25180270 Free PMC article.

10

Interactions of chromatin context, binding site sequence content, and sequence evolution in stress-induced p53 occupancy and transactivation.

Su D, Wang X, Campbell MR, Song L, Safi A, Crawford GE, Bell DA. Su D, et al. Among authors: song l. PLoS Genet. 2015 Jan 8;11(1):e1004885. doi: 10.1371/journal.pgen.1004885. eCollection 2015 Jan. PLoS Genet. 2015. PMID: 25569532 Free PMC article.

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