Sidoli S - Search Results

1

Acetyl-CoA Metabolism Supports Multistep Pancreatic Tumorigenesis.

Carrer A, Trefely S, Zhao S, Campbell SL, Norgard RJ, Schultz KC, Sidoli S, Parris JLD, Affronti HC, Sivanand S, Egolf S, Sela Y, Trizzino M, Gardini A, Garcia BA, Snyder NW, Stanger BZ, Wellen KE. Carrer A, et al. Among authors: sidoli s. Cancer Discov. 2019 Mar;9(3):416-435. doi: 10.1158/2159-8290.CD-18-0567. Epub 2019 Jan 9. Cancer Discov. 2019. PMID: 30626590 Free PMC article.

2

Epigenetic dysregulation from chromosomal transit in micronuclei.

Agustinus AS, Al-Rawi D, Dameracharla B, Raviram R, Jones BSCL, Stransky S, Scipioni L, Luebeck J, Di Bona M, Norkunaite D, Myers RM, Duran M, Choi S, Weigelt B, Yomtoubian S, McPherson A, Toufektchan E, Keuper K, Mischel PS, Mittal V, Shah SP, Maciejowski J, Storchova Z, Gratton E, Ly P, Landau D, Bakhoum MF, Koche RP, Sidoli S, Bafna V, David Y, Bakhoum SF. Agustinus AS, et al. Among authors: sidoli s. Nature. 2023 Jul;619(7968):176-183. doi: 10.1038/s41586-023-06084-7. Epub 2023 Jun 7. Nature. 2023. PMID: 37286593 Free PMC article.

3

Post-Translational Modifications of Histone Variants in the Absence and Presence of a Methionine-Depleting Enzyme in Normal and Cancer Cells.

Montalbano S, Raboni S, Sidoli S, Mozzarelli A, Bettati S, Buschini A. Montalbano S, et al. Among authors: sidoli s. Cancers (Basel). 2023 Jan 15;15(2):527. doi: 10.3390/cancers15020527. Cancers (Basel). 2023. PMID: 36672476 Free PMC article.

4

Dynamic network-guided CRISPRi screen identifies CTCF-loop-constrained nonlinear enhancer gene regulatory activity during cell state transitions.

Luo R, Yan J, Oh JW, Xi W, Shigaki D, Wong W, Cho HS, Murphy D, Cutler R, Rosen BP, Pulecio J, Yang D, Glenn RA, Chen T, Li QV, Vierbuchen T, Sidoli S, Apostolou E, Huangfu D, Beer MA. Luo R, et al. Among authors: sidoli s. Nat Genet. 2023 Aug;55(8):1336-1346. doi: 10.1038/s41588-023-01450-7. Epub 2023 Jul 24. Nat Genet. 2023. PMID: 37488417 Free PMC article.

5

Defining heterochromatin in C. elegans through genome-wide analysis of the heterochromatin protein 1 homolog HPL-2.

Garrigues JM, Sidoli S, Garcia BA, Strome S. Garrigues JM, et al. Among authors: sidoli s. Genome Res. 2015 Jan;25(1):76-88. doi: 10.1101/gr.180489.114. Epub 2014 Dec 2. Genome Res. 2015. PMID: 25467431 Free PMC article.

6

Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH) Analysis for Characterization and Quantification of Histone Post-translational Modifications.

Sidoli S, Lin S, Xiong L, Bhanu NV, Karch KR, Johansen E, Hunter C, Mollah S, Garcia BA. Sidoli S, et al. Mol Cell Proteomics. 2015 Sep;14(9):2420-8. doi: 10.1074/mcp.O114.046102. Epub 2015 Jan 30. Mol Cell Proteomics. 2015. PMID: 25636311 Free PMC article.

7

Drawbacks in the use of unconventional hydrophobic anhydrides for histone derivatization in bottom-up proteomics PTM analysis.

Sidoli S, Yuan ZF, Lin S, Karch K, Wang X, Bhanu N, Arnaudo AM, Britton LM, Cao XJ, Gonzales-Cope M, Han Y, Liu S, Molden RC, Wein S, Afjehi-Sadat L, Garcia BA. Sidoli S, et al. Proteomics. 2015 May;15(9):1459-69. doi: 10.1002/pmic.201400483. Proteomics. 2015. PMID: 25641854 Free PMC article.

8

Bottom-up and middle-down proteomics have comparable accuracies in defining histone post-translational modification relative abundance and stoichiometry.

Sidoli S, Lin S, Karch KR, Garcia BA. Sidoli S, et al. Anal Chem. 2015 Mar 17;87(6):3129-33. doi: 10.1021/acs.analchem.5b00072. Epub 2015 Mar 3. Anal Chem. 2015. PMID: 25719549 Free PMC article.

9

EpiProfile Quantifies Histone Peptides With Modifications by Extracting Retention Time and Intensity in High-resolution Mass Spectra.

Yuan ZF, Lin S, Molden RC, Cao XJ, Bhanu NV, Wang X, Sidoli S, Liu S, Garcia BA. Yuan ZF, et al. Among authors: sidoli s. Mol Cell Proteomics. 2015 Jun;14(6):1696-707. doi: 10.1074/mcp.M114.046011. Epub 2015 Mar 24. Mol Cell Proteomics. 2015. PMID: 25805797 Free PMC article.

10

Proteogenomics analysis reveals specific genomic orientations of distal regulatory regions composed by non-canonical histone variants.

Won KJ, Choi I, LeRoy G, Zee BM, Sidoli S, Gonzales-Cope M, Garcia BA. Won KJ, et al. Among authors: sidoli s. Epigenetics Chromatin. 2015 Apr 10;8:13. doi: 10.1186/s13072-015-0005-9. eCollection 2015. Epigenetics Chromatin. 2015. PMID: 25878728 Free PMC article.

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