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mrsFAST: a cache-oblivious algorithm for short-read mapping.
Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, Sahinalp SC. Hach F, et al. Among authors: sahinalp sc. Nat Methods. 2010 Aug;7(8):576-7. doi: 10.1038/nmeth0810-576. Nat Methods. 2010. PMID: 20676076 Free PMC article. No abstract available.
Alu repeat discovery and characterization within human genomes.
Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE. Hormozdiari F, et al. Among authors: sahinalp sc. Genome Res. 2011 Jun;21(6):840-9. doi: 10.1101/gr.115956.110. Epub 2010 Dec 3. Genome Res. 2011. PMID: 21131385 Free PMC article.
Sensitive and fast mapping of di-base encoded reads.
Hormozdiari F, Hach F, Sahinalp SC, Eichler EE, Alkan C. Hormozdiari F, et al. Among authors: sahinalp sc. Bioinformatics. 2011 Jul 15;27(14):1915-21. doi: 10.1093/bioinformatics/btr303. Epub 2011 May 17. Bioinformatics. 2011. PMID: 21586516 Free PMC article.
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, Huntsman D, Shah SP. McPherson A, et al. Among authors: sahinalp sc. PLoS Comput Biol. 2011 May;7(5):e1001138. doi: 10.1371/journal.pcbi.1001138. Epub 2011 May 19. PLoS Comput Biol. 2011. PMID: 21625565 Free PMC article.
154 results