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Page 1
Federated discovery and sharing of genomic data using Beacons.
Fiume M, Cupak M, Keenan S, Rambla J, de la Torre S, Dyke SOM, Brookes AJ, Carey K, Lloyd D, Goodhand P, Haeussler M, Baudis M, Stockinger H, Dolman L, Lappalainen I, Törnroos J, Linden M, Spalding JD, Ur-Rehman S, Page A, Flicek P, Sherry S, Haussler D, Varma S, Saunders G, Scollen S. Fiume M, et al. Among authors: cupak m. Nat Biotechnol. 2019 Mar;37(3):220-224. doi: 10.1038/s41587-019-0046-x. Nat Biotechnol. 2019. PMID: 30833764 Free PMC article. No abstract available.
Publisher Correction: Federated discovery and sharing of genomic data using Beacons.
Fiume M, Cupak M, Keenan S, Rambla J, de la Torre S, Dyke SOM, Brookes AJ, Carey K, Lloyd D, Goodhand P, Haeussler M, Baudis M, Stockinger H, Dolman L, Lappalainen I, Törnroos J, Linden M, Spalding JD, Ur-Rehman S, Page A, Flicek P, Sherry S, Haussler D, Varma S, Saunders G, Scollen S. Fiume M, et al. Among authors: cupak m. Nat Biotechnol. 2019 Apr;37(4):480. doi: 10.1038/s41587-019-0094-2. Nat Biotechnol. 2019. PMID: 30894680 Free PMC article.
The Winchcombe meteorite, a unique and pristine witness from the outer solar system.
King AJ, Daly L, Rowe J, Joy KH, Greenwood RC, Devillepoix HAR, Suttle MD, Chan QHS, Russell SS, Bates HC, Bryson JFJ, Clay PL, Vida D, Lee MR, O'Brien Á, Hallis LJ, Stephen NR, Tartèse R, Sansom EK, Towner MC, Cupak M, Shober PM, Bland PA, Findlay R, Franchi IA, Verchovsky AB, Abernethy FAJ, Grady MM, Floyd CJ, Van Ginneken M, Bridges J, Hicks LJ, Jones RH, Mitchell JT, Genge MJ, Jenkins L, Martin PE, Sephton MA, Watson JS, Salge T, Shirley KA, Curtis RJ, Warren TJ, Bowles NE, Stuart FM, Di Nicola L, Györe D, Boyce AJ, Shaw KMM, Elliott T, Steele RCJ, Povinec P, Laubenstein M, Sanderson D, Cresswell A, Jull AJT, Sýkora I, Sridhar S, Harrison RJ, Willcocks FM, Harrison CS, Hallatt D, Wozniakiewicz PJ, Burchell MJ, Alesbrook LS, Dignam A, Almeida NV, Smith CL, Clark B, Humphreys-Williams ER, Schofield PF, Cornwell LT, Spathis V, Morgan GH, Perkins MJ, Kacerek R, Campbell-Burns P, Colas F, Zanda B, Vernazza P, Bouley S, Jeanne S, Hankey M, Collins GS, Young JS, Shaw C, Horak J, Jones D, James N, Bosley S, Shuttleworth A, Dickinson P, McMullan I, Robson D, Smedley ARD, Stanley B, Bassom R, McIntyre M, Suttle AA, Fleet R, Bastiaens L, Ihász MB, McMullan S, Boazman SJ, Dickeson … See abstract for full author list ➔ King AJ, et al. Among authors: cupak m. Sci Adv. 2022 Nov 18;8(46):eabq3925. doi: 10.1126/sciadv.abq3925. Epub 2022 Nov 16. Sci Adv. 2022. PMID: 36383648 Free PMC article.
Variant-level matching for diagnosis and discovery: Challenges and opportunities.
Rodrigues EDS, Griffith S, Martin R, Antonescu C, Posey JE, Coban-Akdemir Z, Jhangiani SN, Doheny KF, Lupski JR, Valle D, Bamshad MJ, Hamosh A, Sheffer A, Chong JX, Einhorn Y, Cupak M, Sobreira N. Rodrigues EDS, et al. Among authors: cupak m. Hum Mutat. 2022 Jun;43(6):782-790. doi: 10.1002/humu.24359. Epub 2022 Mar 21. Hum Mutat. 2022. PMID: 35191117 Free PMC article.
GA4GH: International policies and standards for data sharing across genomic research and healthcare.
Rehm HL, Page AJH, Smith L, Adams JB, Alterovitz G, Babb LJ, Barkley MP, Baudis M, Beauvais MJS, Beck T, Beckmann JS, Beltran S, Bernick D, Bernier A, Bonfield JK, Boughtwood TF, Bourque G, Bowers SR, Brookes AJ, Brudno M, Brush MH, Bujold D, Burdett T, Buske OJ, Cabili MN, Cameron DL, Carroll RJ, Casas-Silva E, Chakravarty D, Chaudhari BP, Chen SH, Cherry JM, Chung J, Cline M, Clissold HL, Cook-Deegan RM, Courtot M, Cunningham F, Cupak M, Davies RM, Denisko D, Doerr MJ, Dolman LI, Dove ES, Dursi LJ, Dyke SOM, Eddy JA, Eilbeck K, Ellrott KP, Fairley S, Fakhro KA, Firth HV, Fitzsimons MS, Fiume M, Flicek P, Fore IM, Freeberg MA, Freimuth RR, Fromont LA, Fuerth J, Gaff CL, Gan W, Ghanaim EM, Glazer D, Green RC, Griffith M, Griffith OL, Grossman RL, Groza T, Auvil JMG, Guigó R, Gupta D, Haendel MA, Hamosh A, Hansen DP, Hart RK, Hartley DM, Haussler D, Hendricks-Sturrup RM, Ho CWL, Hobb AE, Hoffman MM, Hofmann OM, Holub P, Hsu JS, Hubaux JP, Hunt SE, Husami A, Jacobsen JO, Jamuar SS, Janes EL, Jeanson F, Jené A, Johns AL, Joly Y, Jones SJM, Kanitz A, Kato K, Keane TM, Kekesi-Lafrance K, Kelleher J, Kerry G, Khor SS, Knoppers BM, Konopko MA, Kosaki K, Kuba M, Lawson J, Leinonen … See abstract for full author list ➔ Rehm HL, et al. Among authors: cupak m. Cell Genom. 2021 Nov 10;1(2):100029. doi: 10.1016/j.xgen.2021.100029. Cell Genom. 2021. PMID: 35072136 Free PMC article.
Registered access: authorizing data access.
Dyke SOM, Linden M, Lappalainen I, De Argila JR, Carey K, Lloyd D, Spalding JD, Cabili MN, Kerry G, Foreman J, Cutts T, Shabani M, Rodriguez LL, Haeussler M, Walsh B, Jiang X, Wang S, Perrett D, Boughtwood T, Matern A, Brookes AJ, Cupak M, Fiume M, Pandya R, Tulchinsky I, Scollen S, Törnroos J, Das S, Evans AC, Malin BA, Beck S, Brenner SE, Nyrönen T, Blomberg N, Firth HV, Hurles M, Philippakis AA, Rätsch G, Brudno M, Boycott KM, Rehm HL, Baudis M, Sherry ST, Kato K, Knoppers BM, Baker D, Flicek P. Dyke SOM, et al. Among authors: cupak m. Eur J Hum Genet. 2018 Dec;26(12):1721-1731. doi: 10.1038/s41431-018-0219-y. Epub 2018 Aug 2. Eur J Hum Genet. 2018. PMID: 30069064 Free PMC article.
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