Zambelli F - Search Results

1

Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance.

Bertolini JA, Favaro R, Zhu Y, Pagin M, Ngan CY, Wong CH, Tjong H, Vermunt MW, Martynoga B, Barone C, Mariani J, Cardozo MJ, Tabanera N, Zambelli F, Mercurio S, Ottolenghi S, Robson P, Creyghton MP, Bovolenta P, Pavesi G, Guillemot F, Nicolis SK, Wei CL. Bertolini JA, et al. Among authors: zambelli f. Cell Stem Cell. 2019 Mar 7;24(3):462-476.e6. doi: 10.1016/j.stem.2019.02.004. Cell Stem Cell. 2019. PMID: 30849367 Free PMC article.

2

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.

Pavesi G, Mereghetti P, Zambelli F, Stefani M, Mauri G, Pesole G. Pavesi G, et al. Among authors: zambelli f. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W566-70. doi: 10.1093/nar/gkl285. Nucleic Acids Res. 2006. PMID: 16845071 Free PMC article.

3

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.

Pavesi G, Zambelli F, Pesole G. Pavesi G, et al. Among authors: zambelli f. BMC Bioinformatics. 2007 Feb 7;8:46. doi: 10.1186/1471-2105-8-46. BMC Bioinformatics. 2007. PMID: 17286865 Free PMC article.

4

Exalign: a new method for comparative analysis of exon-intron gene structures.

Pavesi G, Zambelli F, Caggese C, Pesole G. Pavesi G, et al. Among authors: zambelli f. Nucleic Acids Res. 2008 May;36(8):e47. doi: 10.1093/nar/gkn153. Epub 2008 Apr 8. Nucleic Acids Res. 2008. PMID: 18397951 Free PMC article.

5

Transcriptional network of p63 in human keratinocytes.

Pozzi S, Zambelli F, Merico D, Pavesi G, Robert A, Maltère P, Gidrol X, Mantovani R, Vigano MA. Pozzi S, et al. Among authors: zambelli f. PLoS One. 2009;4(3):e5008. doi: 10.1371/journal.pone.0005008. Epub 2009 Mar 25. PLoS One. 2009. PMID: 19390658 Free PMC article.

6

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.

Zambelli F, Pesole G, Pavesi G. Zambelli F, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W247-52. doi: 10.1093/nar/gkp464. Epub 2009 May 31. Nucleic Acids Res. 2009. PMID: 19487240 Free PMC article.

7

A perspective of promoter architecture from the CCAAT box.

Dolfini D, Zambelli F, Pavesi G, Mantovani R. Dolfini D, et al. Among authors: zambelli f. Cell Cycle. 2009 Dec 15;8(24):4127-37. doi: 10.4161/cc.8.24.10240. Epub 2009 Dec 5. Cell Cycle. 2009. PMID: 19946211

8

An acetylation-mono-ubiquitination switch on lysine 120 of H2B.

Gatta R, Dolfini D, Zambelli F, Imbriano C, Pavesi G, Mantovani R. Gatta R, et al. Among authors: zambelli f. Epigenetics. 2011 May;6(5):630-7. doi: 10.4161/epi.6.5.15623. Epigenetics. 2011. PMID: 21739721 Free article.

9

Gain-of-function p53 mutants have widespread genomic locations partially overlapping with p63.

Martynova E, Pozzi S, Basile V, Dolfini D, Zambelli F, Imbriano C, Pavesi G, Mantovani R. Martynova E, et al. Among authors: zambelli f. Oncotarget. 2012 Feb;3(2):132-43. doi: 10.18632/oncotarget.447. Oncotarget. 2012. PMID: 22361592 Free PMC article.

10

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

Zambelli F, Pesole G, Pavesi G. Zambelli F, et al. Brief Bioinform. 2013 Mar;14(2):225-37. doi: 10.1093/bib/bbs016. Epub 2012 Apr 19. Brief Bioinform. 2013. PMID: 22517426 Free PMC article.

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