Huo Z - Search Results

1

BAYESIAN LATENT HIERARCHICAL MODEL FOR TRANSCRIPTOMIC META-ANALYSIS TO DETECT BIOMARKERS WITH CLUSTERED META-PATTERNS OF DIFFERENTIAL EXPRESSION SIGNALS.

Huo Z, Song C, Tseng G. Huo Z, et al. Ann Appl Stat. 2019 Mar;13(1):340-366. doi: 10.1214/18-AOAS1188. Epub 2019 Apr 10. Ann Appl Stat. 2019. PMID: 31007807 Free PMC article.

2

An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection.

Wang X, Kang DD, Shen K, Song C, Lu S, Chang LC, Liao SG, Huo Z, Tang S, Ding Y, Kaminski N, Sibille E, Lin Y, Li J, Tseng GC. Wang X, et al. Among authors: huo z. Bioinformatics. 2012 Oct 1;28(19):2534-6. doi: 10.1093/bioinformatics/bts485. Epub 2012 Aug 3. Bioinformatics. 2012. PMID: 22863766 Free PMC article.

3

Targeted DNA Methylation Screen in the Mouse Mammary Genome Reveals a Parity-Induced Hypermethylation of Igf1r That Persists Long after Parturition.

Katz TA, Liao SG, Palmieri VJ, Dearth RK, Pathiraja TN, Huo Z, Shaw P, Small S, Davidson NE, Peters DG, Tseng GC, Oesterreich S, Lee AV. Katz TA, et al. Among authors: huo z. Cancer Prev Res (Phila). 2015 Oct;8(10):1000-9. doi: 10.1158/1940-6207.CAPR-15-0178. Epub 2015 Aug 19. Cancer Prev Res (Phila). 2015. PMID: 26290394 Free PMC article.

4

Genomic Copy Number Variations in the Genomes of Leukocytes Predict Prostate Cancer Clinical Outcomes.

Yu YP, Liu S, Huo Z, Martin A, Nelson JB, Tseng GC, Luo JH. Yu YP, et al. Among authors: huo z. PLoS One. 2015 Aug 21;10(8):e0135982. doi: 10.1371/journal.pone.0135982. eCollection 2015. PLoS One. 2015. PMID: 26295840 Free PMC article.

5

Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.

Liu S, Tsai WH, Ding Y, Chen R, Fang Z, Huo Z, Kim S, Ma T, Chang TY, Priedigkeit NM, Lee AV, Luo J, Wang HW, Chung IF, Tseng GC. Liu S, et al. Among authors: huo z. Nucleic Acids Res. 2016 Mar 18;44(5):e47. doi: 10.1093/nar/gkv1234. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26582927 Free PMC article.

6

Meta-analytic framework for sparse K-means to identify disease subtypes in multiple transcriptomic studies.

Huo Z, Ding Y, Liu S, Oesterreich S, Tseng G. Huo Z, et al. J Am Stat Assoc. 2016;111(513):27-42. doi: 10.1080/01621459.2015.1086354. Epub 2016 May 5. J Am Stat Assoc. 2016. PMID: 27330233 Free PMC article.

7

MetaDCN: meta-analysis framework for differential co-expression network detection with an application in breast cancer.

Zhu L, Ding Y, Chen CY, Wang L, Huo Z, Kim S, Sotiriou C, Oesterreich S, Tseng GC. Zhu L, et al. Among authors: huo z. Bioinformatics. 2017 Apr 15;33(8):1121-1129. doi: 10.1093/bioinformatics/btw788. Bioinformatics. 2017. PMID: 28031185 Free PMC article.

8

Transcriptome Alterations in Prefrontal Pyramidal Cells Distinguish Schizophrenia From Bipolar and Major Depressive Disorders.

Arion D, Huo Z, Enwright JF, Corradi JP, Tseng G, Lewis DA. Arion D, et al. Among authors: huo z. Biol Psychiatry. 2017 Oct 15;82(8):594-600. doi: 10.1016/j.biopsych.2017.03.018. Epub 2017 Apr 4. Biol Psychiatry. 2017. PMID: 28476208 Free PMC article.

9

Integrative Sparse K-Means With Overlapping Group Lasso in Genomic Applications for Disease Subtype Discovery.

Huo Z, Tseng G. Huo Z, et al. Ann Appl Stat. 2017 Jun;11(2):1011-1039. doi: 10.1214/17-AOAS1033. Epub 2017 Jul 20. Ann Appl Stat. 2017. PMID: 28959370 Free PMC article.

10

Transcriptome alterations of prefrontal cortical parvalbumin neurons in schizophrenia.

Enwright Iii JF, Huo Z, Arion D, Corradi JP, Tseng G, Lewis DA. Enwright Iii JF, et al. Among authors: huo z. Mol Psychiatry. 2018 Jul;23(7):1606-1613. doi: 10.1038/mp.2017.216. Epub 2017 Nov 7. Mol Psychiatry. 2018. PMID: 29112193 Free PMC article.

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