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In-depth serum proteomics reveals biomarkers of psoriasis severity and response to traditional Chinese medicine.
Xu M, Deng J, Xu K, Zhu T, Han L, Yan Y, Yao D, Deng H, Wang D, Sun Y, Chang C, Zhang X, Dai J, Yue L, Zhang Q, Cai X, Zhu Y, Duan H, Liu Y, Li D, Zhu Y, Radstake TRDJ, Balak DMW, Xu D, Guo T, Lu C, Yu X. Xu M, et al. Among authors: sun y. Theranostics. 2019 Apr 13;9(9):2475-2488. doi: 10.7150/thno.31144. eCollection 2019. Theranostics. 2019. PMID: 31131048 Free PMC article.
Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines.
Guo T, Luna A, Rajapakse VN, Koh CC, Wu Z, Liu W, Sun Y, Gao H, Menden MP, Xu C, Calzone L, Martignetti L, Auwerx C, Buljan M, Banaei-Esfahani A, Ori A, Iskar M, Gillet L, Bi R, Zhang J, Zhang H, Yu C, Zhong Q, Varma S, Schmitt U, Qiu P, Zhang Q, Zhu Y, Wild PJ, Garnett MJ, Bork P, Beck M, Liu K, Saez-Rodriguez J, Elloumi F, Reinhold WC, Sander C, Pommier Y, Aebersold R. Guo T, et al. Among authors: sun y. iScience. 2019 Nov 22;21:664-680. doi: 10.1016/j.isci.2019.10.059. Epub 2019 Oct 31. iScience. 2019. PMID: 31733513 Free PMC article.
Proteomic and Metabolomic Characterization of COVID-19 Patient Sera.
Shen B, Yi X, Sun Y, Bi X, Du J, Zhang C, Quan S, Zhang F, Sun R, Qian L, Ge W, Liu W, Liang S, Chen H, Zhang Y, Li J, Xu J, He Z, Chen B, Wang J, Yan H, Zheng Y, Wang D, Zhu J, Kong Z, Kang Z, Liang X, Ding X, Ruan G, Xiang N, Cai X, Gao H, Li L, Li S, Xiao Q, Lu T, Zhu Y, Liu H, Chen H, Guo T. Shen B, et al. Among authors: sun r, sun y. Cell. 2020 Jul 9;182(1):59-72.e15. doi: 10.1016/j.cell.2020.05.032. Epub 2020 May 28. Cell. 2020. PMID: 32492406 Free PMC article.
Generating Proteomic Big Data for Precision Medicine.
Yue L, Zhang F, Sun R, Sun Y, Yuan C, Zhu Y, Guo T. Yue L, et al. Among authors: sun r, sun y. Proteomics. 2020 Nov;20(21-22):e1900358. doi: 10.1002/pmic.201900358. Epub 2020 Aug 26. Proteomics. 2020. PMID: 32725921
DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery.
Zhu T, Zhu Y, Xuan Y, Gao H, Cai X, Piersma SR, Pham TV, Schelfhorst T, Haas RRGD, Bijnsdorp IV, Sun R, Yue L, Ruan G, Zhang Q, Hu M, Zhou Y, Van Houdt WJ, Le Large TYS, Cloos J, Wojtuszkiewicz A, Koppers-Lalic D, Böttger F, Scheepbouwer C, Brakenhoff RH, van Leenders GJLH, Ijzermans JNM, Martens JWM, Steenbergen RDM, Grieken NC, Selvarajan S, Mantoo S, Lee SS, Yeow SJY, Alkaff SMF, Xiang N, Sun Y, Yi X, Dai S, Liu W, Lu T, Wu Z, Liang X, Wang M, Shao Y, Zheng X, Xu K, Yang Q, Meng Y, Lu C, Zhu J, Zheng J, Wang B, Lou S, Dai Y, Xu C, Yu C, Ying H, Lim TK, Wu J, Gao X, Luan Z, Teng X, Wu P, Huang S, Tao Z, Iyer NG, Zhou S, Shao W, Lam H, Ma D, Ji J, Kon OL, Zheng S, Aebersold R, Jimenez CR, Guo T. Zhu T, et al. Among authors: sun r, sun y. Genomics Proteomics Bioinformatics. 2020 Apr;18(2):104-119. doi: 10.1016/j.gpb.2019.11.008. Epub 2020 Aug 12. Genomics Proteomics Bioinformatics. 2020. PMID: 32795611 Free PMC article.
Phenotype Classification using Proteome Data in a Data-Independent Acquisition Tensor Format.
Zhang F, Yu S, Wu L, Zang Z, Yi X, Zhu J, Lu C, Sun P, Sun Y, Selvarajan S, Chen L, Teng X, Zhao Y, Wang G, Xiao J, Huang S, Kon OL, Iyer NG, Li SZ, Luan Z, Guo T. Zhang F, et al. Among authors: sun p, sun y. J Am Soc Mass Spectrom. 2020 Nov 4;31(11):2296-2304. doi: 10.1021/jasms.0c00254. Epub 2020 Oct 26. J Am Soc Mass Spectrom. 2020. PMID: 33104352
Multi-organ proteomic landscape of COVID-19 autopsies.
Nie X, Qian L, Sun R, Huang B, Dong X, Xiao Q, Zhang Q, Lu T, Yue L, Chen S, Li X, Sun Y, Li L, Xu L, Li Y, Yang M, Xue Z, Liang S, Ding X, Yuan C, Peng L, Liu W, Yi X, Lyu M, Xiao G, Xu X, Ge W, He J, Fan J, Wu J, Luo M, Chang X, Pan H, Cai X, Zhou J, Yu J, Gao H, Xie M, Wang S, Ruan G, Chen H, Su H, Mei H, Luo D, Zhao D, Xu F, Li Y, Zhu Y, Xia J, Hu Y, Guo T. Nie X, et al. Among authors: sun r, sun y. Cell. 2021 Feb 4;184(3):775-791.e14. doi: 10.1016/j.cell.2021.01.004. Epub 2021 Jan 9. Cell. 2021. PMID: 33503446 Free PMC article. Clinical Trial.
Eleven routine clinical features predict COVID-19 severity uncovered by machine learning of longitudinal measurements.
Zhou K, Sun Y, Li L, Zang Z, Wang J, Li J, Liang J, Zhang F, Zhang Q, Ge W, Chen H, Sun X, Yue L, Wu X, Shen B, Xu J, Zhu H, Chen S, Yang H, Huang S, Peng M, Lv D, Zhang C, Zhao H, Hong L, Zhou Z, Chen H, Dong X, Tu C, Li M, Zhu Y, Chen B, Li SZ, Guo T. Zhou K, et al. Among authors: sun y, sun x. Comput Struct Biotechnol J. 2021;19:3640-3649. doi: 10.1016/j.csbj.2021.06.022. Epub 2021 Jun 17. Comput Struct Biotechnol J. 2021. PMID: 34188785 Free PMC article.
Computational Optimization of Spectral Library Size Improves DIA-MS Proteome Coverage and Applications to 15 Tumors.
Ge W, Liang X, Zhang F, Hu Y, Xu L, Xiang N, Sun R, Liu W, Xue Z, Yi X, Sun Y, Wang B, Zhu J, Lu C, Zhan X, Chen L, Wu Y, Zheng Z, Gong W, Wu Q, Yu J, Ye Z, Teng X, Huang S, Zheng S, Liu T, Yuan C, Guo T. Ge W, et al. Among authors: sun r, sun y. J Proteome Res. 2021 Dec 3;20(12):5392-5401. doi: 10.1021/acs.jproteome.1c00640. Epub 2021 Nov 8. J Proteome Res. 2021. PMID: 34748352
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