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Cell type-aware analysis of RNA-seq data.
Jin C, Chen M, Lin D, Sun W. Jin C, et al. Among authors: sun w. Nat Comput Sci. 2021 Apr;1(4):253-261. doi: 10.1038/s43588-021-00055-6. Epub 2021 Apr 15. Nat Comput Sci. 2021. PMID: 34957416 Free PMC article.
A Statistical Method for Association Analysis of Cell Type Compositions.
Huang L, Little P, Huyghe JR, Shi Q, Harrison TA, Yothers G, George TJ, Peters U, Chan AT, Newcomb PA, Sun W. Huang L, et al. Among authors: sun w. Stat Biosci. 2021 Dec;13(3):373-385. doi: 10.1007/s12561-020-09293-0. Epub 2021 Sep 15. Stat Biosci. 2021. PMID: 35003378 Free PMC article.
Mining the human phenome using allelic scores that index biological intermediates.
Evans DM, Brion MJ, Paternoster L, Kemp JP, McMahon G, Munafò M, Whitfield JB, Medland SE, Montgomery GW; GIANT Consortium; CRP Consortium; TAG Consortium; Timpson NJ, St Pourcain B, Lawlor DA, Martin NG, Dehghan A, Hirschhorn J, Smith GD. Evans DM, et al. PLoS Genet. 2013 Oct;9(10):e1003919. doi: 10.1371/journal.pgen.1003919. Epub 2013 Oct 31. PLoS Genet. 2013. PMID: 24204319 Free PMC article.
Landscape of somatic single nucleotide variants and indels in colorectal cancer and impact on survival.
Zaidi SH, Harrison TA, Phipps AI, Steinfelder R, Trinh QM, Qu C, Banbury BL, Georgeson P, Grasso CS, Giannakis M, Adams JB, Alwers E, Amitay EL, Barfield RT, Berndt SI, Borozan I, Brenner H, Brezina S, Buchanan DD, Cao Y, Chan AT, Chang-Claude J, Connolly CM, Drew DA, Farris AB 3rd, Figueiredo JC, French AJ, Fuchs CS, Garraway LA, Gruber S, Guinter MA, Hamilton SR, Harlid S, Heisler LE, Hidaka A, Hopper JL, Huang WY, Huyghe JR, Jenkins MA, Krzyzanowski PM, Lemire M, Lin Y, Luo X, Mardis ER, McPherson JD, Miller JK, Moreno V, Mu XJ, Nishihara R, Papadopoulos N, Pasternack D, Quist MJ, Rafikova A, Reid EEG, Shinbrot E, Shirts BH, Stein LD, Teney CD, Timms L, Um CY, Van Guelpen B, Van Tassel M, Wang X, Wheeler DA, Yung CK, Hsu L, Ogino S, Gsur A, Newcomb PA, Gallinger S, Hoffmeister M, Campbell PT, Thibodeau SN, Sun W, Hudson TJ, Peters U. Zaidi SH, et al. Among authors: sun w. Nat Commun. 2020 Jul 20;11(1):3644. doi: 10.1038/s41467-020-17386-z. Nat Commun. 2020. PMID: 32686686 Free PMC article.
Association between germline variants and somatic mutations in colorectal cancer.
Barfield R, Qu C, Steinfelder RS, Zeng C, Harrison TA, Brezina S, Buchanan DD, Campbell PT, Casey G, Gallinger S, Giannakis M, Gruber SB, Gsur A, Hsu L, Huyghe JR, Moreno V, Newcomb PA, Ogino S, Phipps AI, Slattery ML, Thibodeau SN, Trinh QM, Toland AE, Hudson TJ, Sun W, Zaidi SH, Peters U. Barfield R, et al. Among authors: sun w. Sci Rep. 2022 Jun 17;12(1):10207. doi: 10.1038/s41598-022-14408-2. Sci Rep. 2022. PMID: 35715570 Free PMC article.
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