Kulhánek P - Search Results

1

Bending of DNA duplexes with mutation motifs.

Růžička M, Souček P, Kulhánek P, Radová L, Fajkusová L, Réblová K. Růžička M, et al. Among authors: kulhanek p. DNA Res. 2019 Aug 1;26(4):341-352. doi: 10.1093/dnares/dsz013. DNA Res. 2019. PMID: 31230075 Free PMC article.

2

Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.

Réblová K, Fadrná E, Sarzynska J, Kulinski T, Kulhánek P, Ennifar E, Koca J, Sponer J. Réblová K, et al. Among authors: kulhanek p. Biophys J. 2007 Dec 1;93(11):3932-49. doi: 10.1529/biophysj.107.110056. Epub 2007 Aug 17. Biophys J. 2007. PMID: 17704156 Free PMC article.

3

An RNA molecular switch: Intrinsic flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN internal loops studied by molecular dynamics methods.

Réblová K, Střelcová Z, Kulhánek P, Beššeová I, Mathews DH, Nostrand KV, Yildirim I, Turner DH, Sponer J. Réblová K, et al. Among authors: kulhanek p. J Chem Theory Comput. 2010 Jan 1;2010(6):910-929. J Chem Theory Comput. 2010. PMID: 21132104 Free PMC article.

4

Computational study of missense mutations in phenylalanine hydroxylase.

Réblová K, Kulhánek P, Fajkusová L. Réblová K, et al. Among authors: kulhanek p. J Mol Model. 2015 Apr;21(4):70. doi: 10.1007/s00894-015-2620-6. Epub 2015 Mar 7. J Mol Model. 2015. PMID: 25750018

5

An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN Internal Loops Studied by Molecular Dynamics Methods.

Réblová K, Střelcová Z, Kulhánek P, Beššeová I, Mathews DH, Van Nostrand K, Yildirim I, Turner DH, Šponer J. Réblová K, et al. Among authors: kulhanek p. J Chem Theory Comput. 2010 Mar 9;6(3):910-29. doi: 10.1021/ct900440t. J Chem Theory Comput. 2010. PMID: 26613316

6

DNA mutation motifs in the genes associated with inherited diseases.

Růžička M, Kulhánek P, Radová L, Čechová A, Špačková N, Fajkusová L, Réblová K. Růžička M, et al. Among authors: kulhanek p. PLoS One. 2017 Aug 2;12(8):e0182377. doi: 10.1371/journal.pone.0182377. eCollection 2017. PLoS One. 2017. PMID: 28767725 Free PMC article.

7

Importance of base-pair opening for mismatch recognition.

Bouchal T, Durník I, Illík V, Réblová K, Kulhánek P. Bouchal T, et al. Among authors: kulhanek p. Nucleic Acids Res. 2020 Nov 18;48(20):11322-11334. doi: 10.1093/nar/gkaa896. Nucleic Acids Res. 2020. PMID: 33080020 Free PMC article.

8

Bending of Canonical and G/T Mismatched DNAs.

Bouchal T, Durník I, Kulhánek P. Bouchal T, et al. Among authors: kulhanek p. J Chem Inf Model. 2021 Dec 27;61(12):6000-6011. doi: 10.1021/acs.jcim.1c00731. Epub 2021 Nov 15. J Chem Inf Model. 2021. PMID: 34779609

9

Exploring reaction pathways for O-GlcNAc transferase catalysis. A string method study.

Kumari M, Kozmon S, Kulhánek P, Štepán J, Tvaroška I, Koča J. Kumari M, et al. Among authors: kulhanek p. J Phys Chem B. 2015 Mar 26;119(12):4371-81. doi: 10.1021/jp511235f. Epub 2015 Mar 17. J Phys Chem B. 2015. PMID: 25731954 Free article.

10

Behavior of BsoBI endonuclease in the presence and absence of DNA.

Štěpán J, Kabelka I, Koča J, Kulhánek P. Štěpán J, et al. Among authors: kulhanek p. J Mol Model. 2017 Dec 20;24(1):22. doi: 10.1007/s00894-017-3557-8. J Mol Model. 2017. PMID: 29264670

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