Rogers S - Search Results

1

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools.

Ernst M, Kang KB, Caraballo-Rodríguez AM, Nothias LF, Wandy J, Chen C, Wang M, Rogers S, Medema MH, Dorrestein PC, van der Hooft JJJ. Ernst M, et al. Among authors: rogers s. Metabolites. 2019 Jul 16;9(7):144. doi: 10.3390/metabo9070144. Metabolites. 2019. PMID: 31315242 Free PMC article.

2

MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach.

Daly R, Rogers S, Wandy J, Jankevics A, Burgess KE, Breitling R. Daly R, et al. Among authors: rogers s. Bioinformatics. 2014 Oct;30(19):2764-71. doi: 10.1093/bioinformatics/btu370. Epub 2014 Jun 9. Bioinformatics. 2014. PMID: 24916385 Free PMC article.

3

Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets.

Wandy J, Daly R, Breitling R, Rogers S. Wandy J, et al. Among authors: rogers s. Bioinformatics. 2015 Jun 15;31(12):1999-2006. doi: 10.1093/bioinformatics/btv072. Epub 2015 Feb 2. Bioinformatics. 2015. PMID: 25649621 Free PMC article.

4

Topic modeling for untargeted substructure exploration in metabolomics.

van der Hooft JJ, Wandy J, Barrett MP, Burgess KE, Rogers S. van der Hooft JJ, et al. Among authors: rogers s. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13738-13743. doi: 10.1073/pnas.1608041113. Epub 2016 Nov 16. Proc Natl Acad Sci U S A. 2016. PMID: 27856765 Free PMC article.

5

Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics.

van der Hooft JJJ, Wandy J, Young F, Padmanabhan S, Gerasimidis K, Burgess KEV, Barrett MP, Rogers S. van der Hooft JJJ, et al. Among authors: rogers s. Anal Chem. 2017 Jul 18;89(14):7569-7577. doi: 10.1021/acs.analchem.7b01391. Epub 2017 Jul 5. Anal Chem. 2017. PMID: 28621528 Free PMC article.

6

PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data.

Gloaguen Y, Morton F, Daly R, Gurden R, Rogers S, Wandy J, Wilson D, Barrett M, Burgess K. Gloaguen Y, et al. Among authors: rogers s. Bioinformatics. 2017 Dec 15;33(24):4007-4009. doi: 10.1093/bioinformatics/btx499. Bioinformatics. 2017. PMID: 28961954 Free PMC article.

7

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry.

Wandy J, Zhu Y, van der Hooft JJJ, Daly R, Barrett MP, Rogers S. Wandy J, et al. Among authors: rogers s. Bioinformatics. 2018 Jan 15;34(2):317-318. doi: 10.1093/bioinformatics/btx582. Bioinformatics. 2018. PMID: 28968802 Free PMC article.

8

ShinyKGode: an interactive application for ODE parameter inference using gradient matching.

Wandy J, Niu M, Giurghita D, Daly R, Rogers S, Husmeier D. Wandy J, et al. Among authors: rogers s. Bioinformatics. 2018 Jul 1;34(13):2314-2315. doi: 10.1093/bioinformatics/bty089. Bioinformatics. 2018. PMID: 29490021 Free PMC article.

9

Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra.

Rogers S, Ong CW, Wandy J, Ernst M, Ridder L, van der Hooft JJJ. Rogers S, et al. Faraday Discuss. 2019 Aug 15;218(0):284-302. doi: 10.1039/c8fd00235e. Faraday Discuss. 2019. PMID: 31120050 Free article.

10

In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics.

Wandy J, Davies V, J J van der Hooft J, Weidt S, Daly R, Rogers S. Wandy J, et al. Among authors: rogers s. Metabolites. 2019 Oct 9;9(10):219. doi: 10.3390/metabo9100219. Metabolites. 2019. PMID: 31600991 Free PMC article.

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