Zhang C - Search Results

1

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.

Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, Cetin Atalay R, Zhang C, Hurto RL, Freddolino PL, Zhang Y, Bhat P, Supek F, Fernández JM, Gemovic B, Perovic VR, Davidović RS, Sumonja N, Veljkovic N, Asgari E, Mofrad MRK, Profiti G, Savojardo C, Martelli PL, Casadio R, Boecker F, Schoof H, Kahanda I, Thurlby N, McHardy AC, Renaux A, Saidi R, Gough J, Freitas AA, Antczak M, Fabris F, Wass MN, Hou J, Cheng J, Wang Z, Romero AE, Paccanaro A, Yang H, Goldberg T, Zhao C, Holm L, Törönen P, Medlar AJ, Zosa E, Borukhov I, Novikov I, Wilkins A, Lichtarge O, Chi PH, Tseng WC, Linial M, Rose PW, Dessimoz C, Vidulin V, Dzeroski S, Sillitoe I, Das S, Lees JG, Jones DT, Wan C, Cozzetto D, Fa R, Torres M, Warwick Vesztrocy A, Rodriguez JM, Tress ML, Frasca M, Notaro M, Grossi G, Petrini A, Re M, Valentini G, Mesiti M, Roche DB, Reeb J, Ritchie DW, Aridhi S, Alborzi SZ, Devignes MD, Koo DCE, Bonneau R, Gligorijević V, Barot M, Fang H, Toppo S, Lavezzo E, Falda M, Berselli M, Tosatto SCE, Carraro M, Piovesan D, Ur Rehman H, Mao Q, Zhang S, Vucetic S, Black GS, Jo D, … See abstract for full author list ➔ Zhou N, et al. Among authors: zhang c, zhang s, zhang f, zhang z, zhang y. Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8. Genome Biol. 2019. PMID: 31744546 Free PMC article.

2

BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.

Xiong P, Zhang C, Zheng W, Zhang Y. Xiong P, et al. Among authors: zhang c, zhang y. J Mol Biol. 2017 Feb 3;429(3):426-434. doi: 10.1016/j.jmb.2016.11.022. Epub 2016 Nov 27. J Mol Biol. 2017. PMID: 27899282 Free PMC article.

3

COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information.

Zhang C, Freddolino PL, Zhang Y. Zhang C, et al. Among authors: zhang y. Nucleic Acids Res. 2017 Jul 3;45(W1):W291-W299. doi: 10.1093/nar/gkx366. Nucleic Acids Res. 2017. PMID: 28472402 Free PMC article.

4

Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.

Zhang C, Mortuza SM, He B, Wang Y, Zhang Y. Zhang C, et al. Among authors: zhang y. Proteins. 2018 Mar;86 Suppl 1(Suppl 1):136-151. doi: 10.1002/prot.25414. Epub 2017 Nov 14. Proteins. 2018. PMID: 29082551 Free PMC article.

5

MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping.

Zhang C, Zheng W, Freddolino PL, Zhang Y. Zhang C, et al. Among authors: zhang y. J Mol Biol. 2018 Jul 20;430(15):2256-2265. doi: 10.1016/j.jmb.2018.03.004. Epub 2018 Mar 10. J Mol Biol. 2018. PMID: 29534977 Free PMC article.

6

Structure and Protein Interaction-Based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17.

Zhang C, Wei X, Omenn GS, Zhang Y. Zhang C, et al. Among authors: zhang y. J Proteome Res. 2018 Dec 7;17(12):4186-4196. doi: 10.1021/acs.jproteome.8b00453. Epub 2018 Oct 16. J Proteome Res. 2018. PMID: 30265558 Free PMC article.

7

ResPRE: high-accuracy protein contact prediction by coupling precision matrix with deep residual neural networks.

Li Y, Hu J, Zhang C, Yu DJ, Zhang Y. Li Y, et al. Among authors: zhang c, zhang y. Bioinformatics. 2019 Nov 1;35(22):4647-4655. doi: 10.1093/bioinformatics/btz291. Bioinformatics. 2019. PMID: 31070716 Free PMC article.

8

LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.

Zheng W, Zhang C, Wuyun Q, Pearce R, Li Y, Zhang Y. Zheng W, et al. Among authors: zhang c, zhang y. Nucleic Acids Res. 2019 Jul 2;47(W1):W429-W436. doi: 10.1093/nar/gkz384. Nucleic Acids Res. 2019. PMID: 31081035 Free PMC article.

9

RNA-align: quick and accurate alignment of RNA 3D structures based on size-independent TM-scoreRNA.

Gong S, Zhang C, Zhang Y. Gong S, et al. Among authors: zhang c, zhang y. Bioinformatics. 2019 Nov 1;35(21):4459-4461. doi: 10.1093/bioinformatics/btz282. Bioinformatics. 2019. PMID: 31161212 Free PMC article.

10

Assembling multidomain protein structures through analogous global structural alignments.

Zhou X, Hu J, Zhang C, Zhang G, Zhang Y. Zhou X, et al. Among authors: zhang c, zhang g, zhang y. Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):15930-15938. doi: 10.1073/pnas.1905068116. Epub 2019 Jul 24. Proc Natl Acad Sci U S A. 2019. PMID: 31341084 Free PMC article.

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