Barkley D - Search Results

1

Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates.

Xia B, Yan Y, Baron M, Wagner F, Barkley D, Chiodin M, Kim SY, Keefe DL, Alukal JP, Boeke JD, Yanai I. Xia B, et al. Among authors: barkley d. Cell. 2020 Jan 23;180(2):248-262.e21. doi: 10.1016/j.cell.2019.12.015. Cell. 2020. PMID: 31978344 Free PMC article.

2

Plasticity and Clonality of Cancer Cell States.

Barkley D, Yanai I. Barkley D, et al. Trends Cancer. 2019 Nov;5(11):655-656. doi: 10.1016/j.trecan.2019.09.002. Epub 2019 Oct 14. Trends Cancer. 2019. PMID: 31735281

3

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas.

Moncada R, Barkley D, Wagner F, Chiodin M, Devlin JC, Baron M, Hajdu CH, Simeone DM, Yanai I. Moncada R, et al. Among authors: barkley d. Nat Biotechnol. 2020 Mar;38(3):333-342. doi: 10.1038/s41587-019-0392-8. Epub 2020 Jan 13. Nat Biotechnol. 2020. PMID: 31932730

4

Author Correction: Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas.

Moncada R, Barkley D, Wagner F, Chiodin M, Devlin JC, Baron M, Hajdu CH, Simeone DM, Yanai I. Moncada R, et al. Among authors: barkley d. Nat Biotechnol. 2020 Dec;38(12):1476. doi: 10.1038/s41587-020-00776-5. Nat Biotechnol. 2020. PMID: 33230294

5

Exploring tissue architecture using spatial transcriptomics.

Rao A, Barkley D, França GS, Yanai I. Rao A, et al. Among authors: barkley d. Nature. 2021 Aug;596(7871):211-220. doi: 10.1038/s41586-021-03634-9. Epub 2021 Aug 11. Nature. 2021. PMID: 34381231 Free PMC article. Review.

6

Cancer cell states and emergent properties of the dynamic tumor system.

Barkley D, Rao A, Pour M, França GS, Yanai I. Barkley D, et al. Genome Res. 2021 Oct;31(10):1719-1727. doi: 10.1101/gr.275308.121. Genome Res. 2021. PMID: 34599005 Free PMC article.

7

Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment.

Barkley D, Moncada R, Pour M, Liberman DA, Dryg I, Werba G, Wang W, Baron M, Rao A, Xia B, França GS, Weil A, Delair DF, Hajdu C, Lund AW, Osman I, Yanai I. Barkley D, et al. Nat Genet. 2022 Aug;54(8):1192-1201. doi: 10.1038/s41588-022-01141-9. Epub 2022 Aug 5. Nat Genet. 2022. PMID: 35931863 Free PMC article.

8

Desmosome mutations impact the tumor microenvironment to promote melanoma proliferation.

Baron M, Tagore M, Wall P, Zheng F, Barkley D, Yanai I, Yang J, Kiuru M, White RM, Ideker T. Baron M, et al. Among authors: barkley d. bioRxiv [Preprint]. 2024 Oct 17:2023.09.19.558457. doi: 10.1101/2023.09.19.558457. bioRxiv. 2024. PMID: 37786690 Free PMC article. Preprint.

9

Cellular adaptation to cancer therapy along a resistance continuum.

França GS, Baron M, King BR, Bossowski JP, Bjornberg A, Pour M, Rao A, Patel AS, Misirlioglu S, Barkley D, Tang KH, Dolgalev I, Liberman DA, Avital G, Kuperwaser F, Chiodin M, Levine DA, Papagiannakopoulos T, Marusyk A, Lionnet T, Yanai I. França GS, et al. Among authors: barkley d. Nature. 2024 Jul;631(8022):876-883. doi: 10.1038/s41586-024-07690-9. Epub 2024 Jul 10. Nature. 2024. PMID: 38987605

10

Phase Transition to Turbulence via Moving Fronts.

Gomé S, Rivière A, Tuckerman LS, Barkley D. Gomé S, et al. Among authors: barkley d. Phys Rev Lett. 2024 Jun 28;132(26):264002. doi: 10.1103/PhysRevLett.132.264002. Phys Rev Lett. 2024. PMID: 38996297

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