Mandoiu II - Search Results

1

Eleven grand challenges in single-cell data science.

Lähnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Campbell KR, Beerenwinkel N, Mahfouz A, Pinello L, Skums P, Stamatakis A, Attolini CS, Aparicio S, Baaijens J, Balvert M, Barbanson B, Cappuccio A, Corleone G, Dutilh BE, Florescu M, Guryev V, Holmer R, Jahn K, Lobo TJ, Keizer EM, Khatri I, Kielbasa SM, Korbel JO, Kozlov AM, Kuo TH, Lelieveldt BPF, Mandoiu II, Marioni JC, Marschall T, Mölder F, Niknejad A, Rączkowska A, Reinders M, Ridder J, Saliba AE, Somarakis A, Stegle O, Theis FJ, Yang H, Zelikovsky A, McHardy AC, Raphael BJ, Shah SP, Schönhuth A. Lähnemann D, et al. Among authors: mandoiu ii. Genome Biol. 2020 Feb 7;21(1):31. doi: 10.1186/s13059-020-1926-6. Genome Biol. 2020. PMID: 32033589 Free PMC article. Review.

2

Estimation of alternative splicing isoform frequencies from RNA-Seq data.

Nicolae M, Mangul S, Măndoiu II, Zelikovsky A. Nicolae M, et al. Among authors: mandoiu ii. Algorithms Mol Biol. 2011 Apr 19;6(1):9. doi: 10.1186/1748-7188-6-9. Algorithms Mol Biol. 2011. PMID: 21504602 Free PMC article.

3

Reconstructing viral quasispecies from NGS amplicon reads.

Mancuso N, Tork B, Skums P, Ganova-Raeva L, Măndoiu I, Zelikovsky A. Mancuso N, et al. In Silico Biol. 2011-2012;11(5-6):237-49. doi: 10.3233/ISB-2012-0458. In Silico Biol. 2011. PMID: 23202425

4

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.

Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A. Mangul S, et al. In Silico Biol. 2011-2012;11(5-6):251-61. doi: 10.3233/ISB-2012-0459. In Silico Biol. 2011. PMID: 23202426

5

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.

Skums P, Mancuso N, Artyomenko A, Tork B, Mandoiu I, Khudyakov Y, Zelikovsky A. Skums P, et al. BMC Bioinformatics. 2013;14 Suppl 9(Suppl 9):S2. doi: 10.1186/1471-2105-14-S9-S2. Epub 2013 Jun 28. BMC Bioinformatics. 2013. PMID: 23902469 Free PMC article.

6

ILP-based maximum likelihood genome scaffolding.

Lindsay J, Salooti H, Măndoiu I, Zelikovsky A. Lindsay J, et al. BMC Bioinformatics. 2014;15 Suppl 9(Suppl 9):S9. doi: 10.1186/1471-2105-15-S9-S9. Epub 2014 Sep 10. BMC Bioinformatics. 2014. PMID: 25253180 Free PMC article.

7

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.

Skums P, Artyomenko A, Glebova O, Ramachandran S, Mandoiu I, Campo DS, Dimitrova Z, Zelikovsky A, Khudyakov Y. Skums P, et al. Bioinformatics. 2015 Mar 1;31(5):682-90. doi: 10.1093/bioinformatics/btu726. Epub 2014 Oct 29. Bioinformatics. 2015. PMID: 25359889

8

Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.

Mandric I, Temate-Tiagueu Y, Shcheglova T, Al Seesi S, Zelikovsky A, Mandoiu II. Mandric I, et al. Among authors: mandoiu ii. Bioinformatics. 2017 Oct 15;33(20):3302-3304. doi: 10.1093/bioinformatics/btx365. Bioinformatics. 2017. PMID: 28605502

9

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire.

Gerasimov E, Zelikovsky A, Măndoiu I, Ionov Y. Gerasimov E, et al. BMC Bioinformatics. 2017 Jun 7;18(Suppl 8):244. doi: 10.1186/s12859-017-1661-5. BMC Bioinformatics. 2017. PMID: 28617221 Free PMC article.

10

Locality Sensitive Imputation for Single Cell RNA-Seq Data.

Moussa M, Măndoiu II. Moussa M, et al. Among authors: mandoiu ii. J Comput Biol. 2019 Aug;26(8):822-835. doi: 10.1089/cmb.2018.0236. Epub 2019 Feb 19. J Comput Biol. 2019. PMID: 30785309 Free PMC article.

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