Nix DA - Search Results

1

The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA.

Nix DA, Hellwig S, Conley C, Thomas A, Fuertes CL, Hamil CL, Bhetariya PJ, Garrido-Laguna I, Marth GT, Bronner MP, Underhill HR. Nix DA, et al. PLoS One. 2020 Feb 21;15(2):e0229063. doi: 10.1371/journal.pone.0229063. eCollection 2020. PLoS One. 2020. PMID: 32084206 Free PMC article.

2

Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing.

Hellwig S, Nix DA, Gligorich KM, O'Shea JM, Thomas A, Fuertes CL, Bhetariya PJ, Marth GT, Bronner MP, Underhill HR. Hellwig S, et al. Among authors: nix da. PLoS One. 2018 Jul 25;13(7):e0197333. doi: 10.1371/journal.pone.0197333. eCollection 2018. PLoS One. 2018. PMID: 30044795 Free PMC article.

3

Detection of circulating tumor DNA without a tumor-informed search using next-generation sequencing is a prognostic biomarker in pancreatic ductal adenocarcinoma.

Affolter KE, Hellwig S, Nix DA, Bronner MP, Thomas A, Fuertes CL, Hamil CL, Garrido-Laguna I, Scaife CL, Mulvihill SJ, Underhill HR. Affolter KE, et al. Among authors: nix da. Neoplasia. 2021 Sep;23(9):859-869. doi: 10.1016/j.neo.2021.06.005. Epub 2021 Jul 21. Neoplasia. 2021. PMID: 34298235 Free PMC article.

4

ENCODE tiling array analysis identifies differentially expressed annotated and novel 5' capped RNAs in hepatitis C infected liver.

Folkers ME, Delker DA, Maxwell CI, Nelson CA, Schwartz JJ, Nix DA, Hagedorn CH. Folkers ME, et al. Among authors: nix da. PLoS One. 2011 Feb 16;6(2):e14697. doi: 10.1371/journal.pone.0014697. PLoS One. 2011. PMID: 21359205 Free PMC article.

5

Viral miRNA adaptor differentially recruits miRNAs to target mRNAs through alternative base-pairing.

Gorbea C, Mosbruger T, Nix DA, Cazalla D. Gorbea C, et al. Among authors: nix da. Elife. 2019 Sep 20;8:e50530. doi: 10.7554/eLife.50530. Elife. 2019. PMID: 31538617 Free PMC article.

6

Targeted Gene Sequencing in Children with Crohn's Disease and Their Parents: Implications for Missing Heritability.

Chen JS, Hu F, Kugathasan S, Jorde LB, Nix D, Rutherford A, Denson L, Watkins WS, Prahalad S, Huff C, Guthery SL. Chen JS, et al. G3 (Bethesda). 2018 Aug 30;8(9):2881-2888. doi: 10.1534/g3.118.200404. G3 (Bethesda). 2018. PMID: 30166421 Free PMC article.

7

Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs.

Welker NC, Pavelec DM, Nix DA, Duchaine TF, Kennedy S, Bass BL. Welker NC, et al. Among authors: nix da. RNA. 2010 May;16(5):893-903. doi: 10.1261/rna.2122010. Epub 2010 Mar 30. RNA. 2010. PMID: 20354150 Free PMC article.

8

Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes.

Rowley JW, Oler AJ, Tolley ND, Hunter BN, Low EN, Nix DA, Yost CC, Zimmerman GA, Weyrich AS. Rowley JW, et al. Among authors: nix da. Blood. 2011 Oct 6;118(14):e101-11. doi: 10.1182/blood-2011-03-339705. Epub 2011 May 19. Blood. 2011. PMID: 21596849 Free PMC article.

9

Next generation tools for genomic data generation, distribution, and visualization.

Nix DA, Di Sera TL, Dalley BK, Milash BA, Cundick RM, Quinn KS, Courdy SJ. Nix DA, et al. BMC Bioinformatics. 2010 Sep 9;11:455. doi: 10.1186/1471-2105-11-455. BMC Bioinformatics. 2010. PMID: 20828407 Free PMC article.

10

Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping.

Dutrow N, Nix DA, Holt D, Milash B, Dalley B, Westbroek E, Parnell TJ, Cairns BR. Dutrow N, et al. Among authors: nix da. Nat Genet. 2008 Aug;40(8):977-86. doi: 10.1038/ng.196. Epub 2008 Jul 20. Nat Genet. 2008. PMID: 18641648 Free PMC article.

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