Domenzain I - Search Results

1

Robinson JL, Kocabaş P, Wang H, Cholley PE, Cook D, Nilsson A, Anton M, Ferreira R, Domenzain I, Billa V, Limeta A, Hedin A, Gustafsson J, Kerkhoven EJ, Svensson LT, Palsson BO, Mardinoglu A, Hansson L, Uhlén M, Nielsen J. Robinson JL, et al. Among authors: domenzain i. Sci Signal. 2020 Mar 24;13(624):eaaz1482. doi: 10.1126/scisignal.aaz1482. Sci Signal. 2020. PMID: 32209698 Free PMC article.

2

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor.

Wang H, Marcišauskas S, Sánchez BJ, Domenzain I, Hermansson D, Agren R, Nielsen J, Kerkhoven EJ. Wang H, et al. Among authors: domenzain i. PLoS Comput Biol. 2018 Oct 18;14(10):e1006541. doi: 10.1371/journal.pcbi.1006541. eCollection 2018 Oct. PLoS Comput Biol. 2018. PMID: 30335785 Free PMC article.

3

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism.

Lu H, Li F, Sánchez BJ, Zhu Z, Li G, Domenzain I, Marcišauskas S, Anton PM, Lappa D, Lieven C, Beber ME, Sonnenschein N, Kerkhoven EJ, Nielsen J. Lu H, et al. Among authors: domenzain i. Nat Commun. 2019 Aug 8;10(1):3586. doi: 10.1038/s41467-019-11581-3. Nat Commun. 2019. PMID: 31395883 Free PMC article.

4

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0.

Domenzain I, Sánchez B, Anton M, Kerkhoven EJ, Millán-Oropeza A, Henry C, Siewers V, Morrissey JP, Sonnenschein N, Nielsen J. Domenzain I, et al. Nat Commun. 2022 Jun 30;13(1):3766. doi: 10.1038/s41467-022-31421-1. Nat Commun. 2022. PMID: 35773252 Free PMC article.

5

Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species.

Domenzain I, Li F, Kerkhoven EJ, Siewers V. Domenzain I, et al. FEMS Yeast Res. 2021 Mar 4;21(1):foab002. doi: 10.1093/femsyr/foab002. FEMS Yeast Res. 2021. PMID: 33428734 Free PMC article.

6

Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection.

Lu H, Li F, Yuan L, Domenzain I, Yu R, Wang H, Li G, Chen Y, Ji B, Kerkhoven EJ, Nielsen J. Lu H, et al. Among authors: domenzain i. Mol Syst Biol. 2021 Oct;17(10):e10427. doi: 10.15252/msb.202110427. Mol Syst Biol. 2021. PMID: 34676984 Free PMC article.

7

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism.

Lu H, Li F, Sánchez BJ, Zhu Z, Li G, Domenzain I, Marcišauskas S, Anton PM, Lappa D, Lieven C, Beber ME, Sonnenschein N, Kerkhoven EJ, Nielsen J. Lu H, et al. Among authors: domenzain i. Nat Commun. 2020 Oct 22;11(1):5443. doi: 10.1038/s41467-020-19358-9. Nat Commun. 2020. PMID: 33093448 Free PMC article.

8

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism.

Österberg L, Domenzain I, Münch J, Nielsen J, Hohmann S, Cvijovic M. Österberg L, et al. Among authors: domenzain i. PLoS Comput Biol. 2021 Apr 9;17(4):e1008891. doi: 10.1371/journal.pcbi.1008891. eCollection 2021 Apr. PLoS Comput Biol. 2021. PMID: 33836000 Free PMC article.

9

Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae.

Ishchuk OP, Domenzain I, Sánchez BJ, Muñiz-Paredes F, Martínez JL, Nielsen J, Petranovic D. Ishchuk OP, et al. Among authors: domenzain i. Proc Natl Acad Sci U S A. 2022 Jul 26;119(30):e2108245119. doi: 10.1073/pnas.2108245119. Epub 2022 Jul 18. Proc Natl Acad Sci U S A. 2022. PMID: 35858410 Free PMC article.

10

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae.

Sánchez BJ, Lahtvee PJ, Campbell K, Kasvandik S, Yu R, Domenzain I, Zelezniak A, Nielsen J. Sánchez BJ, et al. Among authors: domenzain i. Proteomics. 2021 Mar;21(6):e2000093. doi: 10.1002/pmic.202000093. Epub 2021 Feb 23. Proteomics. 2021. PMID: 33452728

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