James K - Search Results

1

The gene-rich genome of the scallop Pecten maximus.

Kenny NJ, McCarthy SA, Dudchenko O, James K, Betteridge E, Corton C, Dolucan J, Mead D, Oliver K, Omer AD, Pelan S, Ryan Y, Sims Y, Skelton J, Smith M, Torrance J, Weisz D, Wipat A, Aiden EL, Howe K, Williams ST. Kenny NJ, et al. Among authors: james k. Gigascience. 2020 May 1;9(5):giaa037. doi: 10.1093/gigascience/giaa037. Gigascience. 2020. PMID: 32352532 Free PMC article.

2

Is newer better?--evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae.

James K, Wipat A, Hallinan J. James K, et al. Integr Biol (Camb). 2012 Jul;4(7):715-27. doi: 10.1039/c2ib00123c. Epub 2012 Apr 23. Integr Biol (Camb). 2012. PMID: 22526920

3

Network approaches to the functional analysis of microbial proteins.

Hallinan JS, James K, Wipat A. Hallinan JS, et al. Among authors: james k. Adv Microb Physiol. 2011;59:101-33. doi: 10.1016/B978-0-12-387661-4.00005-7. Adv Microb Physiol. 2011. PMID: 22114841 Review.

4

BacillOndex: an integrated data resource for systems and synthetic biology.

Misirli G, Wipat A, Mullen J, James K, Pocock M, Smith W, Allenby N, Hallinan JS. Misirli G, et al. Among authors: james k. J Integr Bioinform. 2013 Apr 10;10(2):224. doi: 10.2390/biecoll-jib-2013-224. J Integr Bioinform. 2013. PMID: 23571273

5

Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits.

Mısırlı G, Yang B, James K, Wipat A. Mısırlı G, et al. Among authors: james k. ACS Synth Biol. 2021 Dec 17;10(12):3304-3315. doi: 10.1021/acssynbio.1c00157. Epub 2021 Nov 11. ACS Synth Biol. 2021. PMID: 34762797

6

Expanding interactome analyses beyond model eukaryotes.

James K, Wipat A, Cockell SJ. James K, et al. Brief Funct Genomics. 2022 Jul 27;21(4):243-269. doi: 10.1093/bfgp/elac007. Brief Funct Genomics. 2022. PMID: 35552596 Review.

7

A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD+ biosynthetic gene BNA2 in chromosome end protection.

Greenall A, Lei G, Swan DC, James K, Wang L, Peters H, Wipat A, Wilkinson DJ, Lydall D. Greenall A, et al. Among authors: james k. Genome Biol. 2008 Oct 1;9(10):R146. doi: 10.1186/gb-2008-9-10-r146. Genome Biol. 2008. PMID: 18828915 Free PMC article.

8

Integration of probabilistic functional networks without an external Gold Standard.

James K, Alsobhe A, Cockell SJ, Wipat A, Pocock M. James K, et al. BMC Bioinformatics. 2022 Jul 25;23(1):302. doi: 10.1186/s12859-022-04834-4. BMC Bioinformatics. 2022. PMID: 35879662 Free PMC article.

9

Bayesian integration of networks without gold standards.

Weile J, James K, Hallinan J, Cockell SJ, Lord P, Wipat A, Wilkinson DJ. Weile J, et al. Among authors: james k. Bioinformatics. 2012 Jun 1;28(11):1495-500. doi: 10.1093/bioinformatics/bts154. Epub 2012 Apr 6. Bioinformatics. 2012. PMID: 22492647 Free PMC article.

10

Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL).

Brown B, Bartley B, Beal J, Bird JE, Goñi-Moreno Á, McLaughlin JA, Mısırlı G, Roehner N, Skelton DJ, Poh CL, Ofiteru ID, James K, Wipat A. Brown B, et al. Among authors: james k. ACS Synth Biol. 2020 Sep 18;9(9):2410-2417. doi: 10.1021/acssynbio.0c00176. Epub 2020 Aug 20. ACS Synth Biol. 2020. PMID: 32786354

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