Kappel K - Search Results

1

Distinct Conformational States Underlie Pausing during Initiation of HIV-1 Reverse Transcription.

Larsen KP, Choi J, Jackson LN, Kappel K, Zhang J, Ha B, Chen DH, Puglisi EV. Larsen KP, et al. Among authors: kappel k. J Mol Biol. 2020 Jul 24;432(16):4499-4522. doi: 10.1016/j.jmb.2020.06.003. Epub 2020 Jun 6. J Mol Biol. 2020. PMID: 32512005 Free PMC article.

2

Architecture of an HIV-1 reverse transcriptase initiation complex.

Larsen KP, Mathiharan YK, Kappel K, Coey AT, Chen DH, Barrero D, Madigan L, Puglisi JD, Skiniotis G, Puglisi EV. Larsen KP, et al. Among authors: kappel k. Nature. 2018 May;557(7703):118-122. doi: 10.1038/s41586-018-0055-9. Epub 2018 Apr 25. Nature. 2018. PMID: 29695867 Free PMC article.

3

De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes.

Kappel K, Liu S, Larsen KP, Skiniotis G, Puglisi EV, Puglisi JD, Zhou ZH, Zhao R, Das R. Kappel K, et al. Nat Methods. 2018 Nov;15(11):947-954. doi: 10.1038/s41592-018-0172-2. Epub 2018 Oct 30. Nat Methods. 2018. PMID: 30377372 Free PMC article.

4

Auto-DRRAFTER: Automated RNA Modeling Based on Cryo-EM Density.

Ma H, Pham P, Luo B, Rangan R, Kappel K, Su Z, Das R. Ma H, et al. Among authors: kappel k. Methods Mol Biol. 2023;2568:193-211. doi: 10.1007/978-1-0716-2687-0_13. Methods Mol Biol. 2023. PMID: 36227570

5

Single-molecule FRET-Rosetta reveals RNA structural rearrangements during human telomerase catalysis.

Parks JW, Kappel K, Das R, Stone MD. Parks JW, et al. Among authors: kappel k. RNA. 2017 Feb;23(2):175-188. doi: 10.1261/rna.058743.116. Epub 2016 Nov 15. RNA. 2017. PMID: 28096444 Free PMC article.

6

Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution.

Su Z, Zhang K, Kappel K, Li S, Palo MZ, Pintilie GD, Rangan R, Luo B, Wei Y, Das R, Chiu W. Su Z, et al. Among authors: kappel k. Nature. 2021 Aug;596(7873):603-607. doi: 10.1038/s41586-021-03803-w. Epub 2021 Aug 11. Nature. 2021. PMID: 34381213 Free PMC article.

7

Blind tests of RNA-protein binding affinity prediction.

Kappel K, Jarmoskaite I, Vaidyanathan PP, Greenleaf WJ, Herschlag D, Das R. Kappel K, et al. Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8336-8341. doi: 10.1073/pnas.1819047116. Epub 2019 Apr 8. Proc Natl Acad Sci U S A. 2019. PMID: 30962376 Free PMC article.

8

Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution.

Zhang K, Li S, Kappel K, Pintilie G, Su Z, Mou TC, Schmid MF, Das R, Chiu W. Zhang K, et al. Among authors: kappel k. Nat Commun. 2019 Dec 3;10(1):5511. doi: 10.1038/s41467-019-13494-7. Nat Commun. 2019. PMID: 31796736 Free PMC article.

9

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures.

Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R. Kappel K, et al. Nat Methods. 2020 Jul;17(7):699-707. doi: 10.1038/s41592-020-0878-9. Epub 2020 Jul 2. Nat Methods. 2020. PMID: 32616928 Free PMC article.

10

A Quantitative and Predictive Model for RNA Binding by Human Pumilio Proteins.

Jarmoskaite I, Denny SK, Vaidyanathan PP, Becker WR, Andreasson JOL, Layton CJ, Kappel K, Shivashankar V, Sreenivasan R, Das R, Greenleaf WJ, Herschlag D. Jarmoskaite I, et al. Among authors: kappel k. Mol Cell. 2019 Jun 6;74(5):966-981.e18. doi: 10.1016/j.molcel.2019.04.012. Epub 2019 May 8. Mol Cell. 2019. PMID: 31078383 Free PMC article.

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