Sims PA - Search Results

1

Single-Cell Profiling and SCOPE-Seq Reveal Lineage Dynamics of Adult Ventricular-Subventricular Zone Neurogenesis and NOTUM as a Key Regulator.

Mizrak D, Bayin NS, Yuan J, Liu Z, Suciu RM, Niphakis MJ, Ngo N, Lum KM, Cravatt BF, Joyner AL, Sims PA. Mizrak D, et al. Among authors: sims pa. Cell Rep. 2020 Jun 23;31(12):107805. doi: 10.1016/j.celrep.2020.107805. Cell Rep. 2020. PMID: 32579931 Free PMC article.

2

An Automated Microwell Platform for Large-Scale Single Cell RNA-Seq.

Yuan J, Sims PA. Yuan J, et al. Among authors: sims pa. Sci Rep. 2016 Sep 27;6:33883. doi: 10.1038/srep33883. Sci Rep. 2016. PMID: 27670648 Free PMC article.

3

SPOTs fill a major gap in RNA quantification.

Yuan J, Sims PA. Yuan J, et al. Among authors: sims pa. Nat Methods. 2017 Nov 30;14(12):1137-1138. doi: 10.1038/nmeth.4515. Nat Methods. 2017. PMID: 29190269 No abstract available.

4

Single-Cell Transcriptomic Analysis of Tumor Heterogeneity.

Levitin HM, Yuan J, Sims PA. Levitin HM, et al. Among authors: sims pa. Trends Cancer. 2018 Apr;4(4):264-268. doi: 10.1016/j.trecan.2018.02.003. Epub 2018 Mar 9. Trends Cancer. 2018. PMID: 29606308 Free PMC article. Review.

5

Single-cell transcriptome analysis of lineage diversity in high-grade glioma.

Yuan J, Levitin HM, Frattini V, Bush EC, Boyett DM, Samanamud J, Ceccarelli M, Dovas A, Zanazzi G, Canoll P, Bruce JN, Lasorella A, Iavarone A, Sims PA. Yuan J, et al. Among authors: sims pa. Genome Med. 2018 Jul 24;10(1):57. doi: 10.1186/s13073-018-0567-9. Genome Med. 2018. PMID: 30041684 Free PMC article.

6

SCOPE-Seq: a scalable technology for linking live cell imaging and single-cell RNA sequencing.

Yuan J, Sheng J, Sims PA. Yuan J, et al. Among authors: sims pa. Genome Biol. 2018 Dec 24;19(1):227. doi: 10.1186/s13059-018-1607-x. Genome Biol. 2018. PMID: 30583733 Free PMC article.

7

Single-Cell Analysis of Regional Differences in Adult V-SVZ Neural Stem Cell Lineages.

Mizrak D, Levitin HM, Delgado AC, Crotet V, Yuan J, Chaker Z, Silva-Vargas V, Sims PA, Doetsch F. Mizrak D, et al. Among authors: sims pa. Cell Rep. 2019 Jan 8;26(2):394-406.e5. doi: 10.1016/j.celrep.2018.12.044. Cell Rep. 2019. PMID: 30625322 Free PMC article.

8

De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization.

Levitin HM, Yuan J, Cheng YL, Ruiz FJ, Bush EC, Bruce JN, Canoll P, Iavarone A, Lasorella A, Blei DM, Sims PA. Levitin HM, et al. Among authors: sims pa. Mol Syst Biol. 2019 Feb 22;15(2):e8557. doi: 10.15252/msb.20188557. Mol Syst Biol. 2019. PMID: 30796088 Free PMC article.

9

Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease.

Szabo PA, Levitin HM, Miron M, Snyder ME, Senda T, Yuan J, Cheng YL, Bush EC, Dogra P, Thapa P, Farber DL, Sims PA. Szabo PA, et al. Among authors: sims pa. Nat Commun. 2019 Oct 17;10(1):4706. doi: 10.1038/s41467-019-12464-3. Nat Commun. 2019. PMID: 31624246 Free PMC article.

10

Single-Cell Transcriptional Profiling of the Intestinal Epithelium.

Capdevila C, Calderon RI, Bush EC, Sheldon-Collins K, Sims PA, Yan KS. Capdevila C, et al. Among authors: sims pa. Methods Mol Biol. 2020;2171:129-153. doi: 10.1007/978-1-0716-0747-3_8. Methods Mol Biol. 2020. PMID: 32705639 Review.

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