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qSNE: quadratic rate t-SNE optimizer with automatic parameter tuning for large datasets.
Häkkinen A, Koiranen J, Casado J, Kaipio K, Lehtonen O, Petrucci E, Hynninen J, Hietanen S, Carpén O, Pasquini L, Biffoni M, Lehtonen R, Hautaniemi S. Häkkinen A, et al. Among authors: biffoni m. Bioinformatics. 2020 Dec 22;36(20):5086-5092. doi: 10.1093/bioinformatics/btaa637. Bioinformatics. 2020. PMID: 32663244 Free PMC article.
Podocalyxin is expressed in normal and leukemic monocytes.
Riccioni R, Calzolari A, Biffoni M, Senese M, Riti V, Petrucci E, Pasquini L, Cedrone M, Lo-Coco F, Diverio D, Foà R, Peschle C, Testa U. Riccioni R, et al. Among authors: biffoni m. Blood Cells Mol Dis. 2006 Nov-Dec;37(3):218-25. doi: 10.1016/j.bcmd.2006.09.001. Epub 2006 Oct 23. Blood Cells Mol Dis. 2006. PMID: 17059890 Clinical Trial.
Proteasome inhibitors sensitize ovarian cancer cells to TRAIL induced apoptosis.
Saulle E, Petronelli A, Pasquini L, Petrucci E, Mariani G, Biffoni M, Ferretti G, Scambia G, Benedetti-Panici P, Cognetti F, Humphreys R, Peschle C, Testa U. Saulle E, et al. Among authors: biffoni m. Apoptosis. 2007 Apr;12(4):635-55. doi: 10.1007/s10495-006-0025-9. Apoptosis. 2007. PMID: 17252198
A small molecule Smac mimic potentiates TRAIL-mediated cell death of ovarian cancer cells.
Petrucci E, Pasquini L, Petronelli A, Saulle E, Mariani G, Riccioni R, Biffoni M, Ferretti G, Benedetti-Panici P, Cognetti F, Scambia G, Humphreys R, Peschle C, Testa U. Petrucci E, et al. Among authors: biffoni m. Gynecol Oncol. 2007 May;105(2):481-92. doi: 10.1016/j.ygyno.2007.01.011. Epub 2007 Feb 9. Gynecol Oncol. 2007. PMID: 17292950
A three-step pathway comprising PLZF/miR-146a/CXCR4 controls megakaryopoiesis.
Labbaye C, Spinello I, Quaranta MT, Pelosi E, Pasquini L, Petrucci E, Biffoni M, Nuzzolo ER, Billi M, Foà R, Brunetti E, Grignani F, Testa U, Peschle C. Labbaye C, et al. Among authors: biffoni m. Nat Cell Biol. 2008 Jul;10(7):788-801. doi: 10.1038/ncb1741. Epub 2008 Jun 22. Nat Cell Biol. 2008. PMID: 18568019
High sensitivity of ovarian cancer cells to the synthetic triterpenoid CDDO-Imidazolide.
Petronelli A, Saulle E, Pasquini L, Petrucci E, Mariani G, Biffoni M, Ferretti G, Scambia G, Benedetti-Panici P, Greggi S, Cognetti F, Russo MA, Sporn M, Testa U. Petronelli A, et al. Among authors: biffoni m. Cancer Lett. 2009 Sep 18;282(2):214-28. doi: 10.1016/j.canlet.2009.03.018. Epub 2009 Apr 11. Cancer Lett. 2009. PMID: 19364626
Agile workflow for interactive analysis of mass cytometry data.
Casado J, Lehtonen O, Rantanen V, Kaipio K, Pasquini L, Häkkinen A, Petrucci E, Hynninen J, Hietanen S, Carpén O, Biffoni M, Färkkilä A, Hautaniemi S. Casado J, et al. Among authors: biffoni m. Bioinformatics. 2021 Jun 9;37(9):1263-1268. doi: 10.1093/bioinformatics/btaa946. Bioinformatics. 2021. PMID: 33135052 Free PMC article.
189 results