Shao W - Search Results

1

regSNPs-ASB: A Computational Framework for Identifying Allele-Specific Transcription Factor Binding From ATAC-seq Data.

Xu S, Feng W, Lu Z, Yu CY, Shao W, Nakshatri H, Reiter JL, Gao H, Chu X, Wang Y, Liu Y. Xu S, et al. Among authors: shao w. Front Bioeng Biotechnol. 2020 Jul 29;8:886. doi: 10.3389/fbioe.2020.00886. eCollection 2020. Front Bioeng Biotechnol. 2020. PMID: 32850739 Free PMC article.

2

BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes.

Wang T, Johnson TS, Shao W, Lu Z, Helm BR, Zhang J, Huang K. Wang T, et al. Among authors: shao w. Genome Biol. 2019 Aug 12;20(1):165. doi: 10.1186/s13059-019-1764-6. Genome Biol. 2019. PMID: 31405383 Free PMC article.

3

Deep-Learning-Based Characterization of Tumor-Infiltrating Lymphocytes in Breast Cancers From Histopathology Images and Multiomics Data.

Lu Z, Xu S, Shao W, Wu Y, Zhang J, Han Z, Feng Q, Huang K. Lu Z, et al. Among authors: shao w. JCO Clin Cancer Inform. 2020 May;4:480-490. doi: 10.1200/CCI.19.00126. JCO Clin Cancer Inform. 2020. PMID: 32453636 Free PMC article.

4

Integrative analysis of histopathological images and chromatin accessibility data for estrogen receptor-positive breast cancer.

Xu S, Lu Z, Shao W, Yu CY, Reiter JL, Feng Q, Feng W, Huang K, Liu Y. Xu S, et al. Among authors: shao w. BMC Med Genomics. 2020 Dec 28;13(Suppl 11):195. doi: 10.1186/s12920-020-00828-4. BMC Med Genomics. 2020. PMID: 33371906 Free PMC article.

5

BrcaSeg: A Deep Learning Approach for Tissue Quantification and Genomic Correlations of Histopathological Images.

Lu Z, Zhan X, Wu Y, Cheng J, Shao W, Ni D, Han Z, Zhang J, Feng Q, Huang K. Lu Z, et al. Among authors: shao w. Genomics Proteomics Bioinformatics. 2021 Dec;19(6):1032-1042. doi: 10.1016/j.gpb.2020.06.026. Epub 2021 Jul 17. Genomics Proteomics Bioinformatics. 2021. PMID: 34280546 Free PMC article.

6

TPSC: a module detection method based on topology potential and spectral clustering in weighted networks and its application in gene co-expression module discovery.

Liu Y, Ye X, Yu CY, Shao W, Hou J, Feng W, Zhang J, Huang K. Liu Y, et al. Among authors: shao w. BMC Bioinformatics. 2021 Oct 25;22(Suppl 4):111. doi: 10.1186/s12859-021-03964-5. BMC Bioinformatics. 2021. PMID: 34689740 Free PMC article.

7

Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease.

Johnson TS, Yu CY, Huang Z, Xu S, Wang T, Dong C, Shao W, Zaid MA, Huang X, Wang Y, Bartlett C, Zhang Y, Walker BA, Liu Y, Huang K, Zhang J. Johnson TS, et al. Among authors: shao w. Genome Med. 2022 Feb 1;14(1):11. doi: 10.1186/s13073-022-01012-2. Genome Med. 2022. PMID: 35105355 Free PMC article.

8

Integrative Analysis of Pathological Images and Multi-Dimensional Genomic Data for Early-Stage Cancer Prognosis.

Shao W, Han Z, Cheng J, Cheng L, Wang T, Sun L, Lu Z, Zhang J, Zhang D, Huang K. Shao W, et al. IEEE Trans Med Imaging. 2020 Jan;39(1):99-110. doi: 10.1109/TMI.2019.2920608. Epub 2019 Jun 3. IEEE Trans Med Imaging. 2020. PMID: 31170067

9

Characterizing the Survival-Associated Interactions Between Tumor-Infiltrating Lymphocytes and Tumors From Pathological Images and Multi-Omics Data.

Shao W, Zuo Y, Shi Y, Wu Y, Tang J, Zhao J, Sun L, Lu Z, Sheng J, Zhu Q, Zhang D. Shao W, et al. IEEE Trans Med Imaging. 2023 Oct;42(10):3025-3035. doi: 10.1109/TMI.2023.3274652. Epub 2023 Oct 2. IEEE Trans Med Imaging. 2023. PMID: 37159321

10

TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining.

Huang Z, Han Z, Wang T, Shao W, Xiang S, Salama P, Rizkalla M, Huang K, Zhang J. Huang Z, et al. Among authors: shao w. Genomics Proteomics Bioinformatics. 2021 Dec;19(6):1023-1031. doi: 10.1016/j.gpb.2019.05.006. Epub 2021 Mar 8. Genomics Proteomics Bioinformatics. 2021. PMID: 33705981 Free PMC article.

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