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BOSC 2019, the 20th annual Bioinformatics Open Source Conference.
Harris NL, Cock PJA, Fields CJ, Greshake Tzovaras B, Heuer M, Hokamp K, Munoz-Torres M, Peltzer A, Rieck B, Wiencko H, Yehudi Y. Harris NL, et al. Among authors: yehudi y. F1000Res. 2019 Dec 20;8:ISCB Comm J-2132. doi: 10.12688/f1000research.21568.1. eCollection 2019. F1000Res. 2019. PMID: 32025286 Free PMC article.
HumanMine: advanced data searching, analysis and cross-species comparison.
Lyne R, Bazaga A, Butano D, Contrino S, Heimbach J, Hu F, Kalderimis A, Lyne M, Reierskog K, Stepan R, Sullivan J, Wise A, Yehudi Y, Micklem G. Lyne R, et al. Among authors: yehudi y. Database (Oxford). 2022 Jul 12;2022:baac054. doi: 10.1093/database/baac054. Database (Oxford). 2022. PMID: 35820040 Free PMC article.
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
Sivade Dumousseau M, Alonso-López D, Ammari M, Bradley G, Campbell NH, Ceol A, Cesareni G, Combe C, De Las Rivas J, Del-Toro N, Heimbach J, Hermjakob H, Jurisica I, Koch M, Licata L, Lovering RC, Lynn DJ, Meldal BHM, Micklem G, Panni S, Porras P, Ricard-Blum S, Roechert B, Salwinski L, Shrivastava A, Sullivan J, Thierry-Mieg N, Yehudi Y, Van Roey K, Orchard S. Sivade Dumousseau M, et al. Among authors: yehudi y. BMC Bioinformatics. 2018 Apr 11;19(1):134. doi: 10.1186/s12859-018-2118-1. BMC Bioinformatics. 2018. PMID: 29642841 Free PMC article.
JAMI: a Java library for molecular interactions and data interoperability.
Sivade Dumousseau M, Koch M, Shrivastava A, Alonso-López D, De Las Rivas J, Del-Toro N, Combe CW, Meldal BHM, Heimbach J, Rappsilber J, Sullivan J, Yehudi Y, Orchard S. Sivade Dumousseau M, et al. Among authors: yehudi y. BMC Bioinformatics. 2018 Apr 11;19(1):133. doi: 10.1186/s12859-018-2119-0. BMC Bioinformatics. 2018. PMID: 29642846 Free PMC article.
Ten simple rules for establishing a mentorship programme.
Treasure AM, Hall SM, Lesko I, Moore D, Sharan M, van Zaanen M, Yehudi Y, van der Walt A. Treasure AM, et al. Among authors: yehudi y. PLoS Comput Biol. 2022 May 12;18(5):e1010015. doi: 10.1371/journal.pcbi.1010015. eCollection 2022 May. PLoS Comput Biol. 2022. PMID: 35551516 Free PMC article.
Video grant proposals could be exclusionary.
Spitschan M, Yehudi Y, Acion L. Spitschan M, et al. Among authors: yehudi y. Nature. 2021 Apr;592(7852):26. doi: 10.1038/d41586-021-00862-x. Nature. 2021. PMID: 33785918 No abstract available.