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Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis.
Seirup M, Chu LF, Sengupta S, Leng N, Browder H, Kapadia K, Shafer CM, Duffin B, Elwell AL, Bolin JM, Swanson S, Stewart R, Kendziorski C, Thomson JA, Bacher R. Seirup M, et al. Among authors: leng n. PLoS One. 2020 Sep 28;15(9):e0239711. doi: 10.1371/journal.pone.0239711. eCollection 2020. PLoS One. 2020. PMID: 32986734 Free PMC article.
SCnorm: robust normalization of single-cell RNA-seq data.
Bacher R, Chu LF, Leng N, Gasch AP, Thomson JA, Stewart RM, Newton M, Kendziorski C. Bacher R, et al. Among authors: leng n. Nat Methods. 2017 Jun;14(6):584-586. doi: 10.1038/nmeth.4263. Epub 2017 Apr 17. Nat Methods. 2017. PMID: 28418000 Free PMC article.
Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics.
Barry C, Schmitz MT, Argus C, Bolin JM, Probasco MD, Leng N, Duffin BM, Steill J, Swanson S, McIntosh BE, Stewart R, Kendziorski C, Thomson JA, Bacher R. Barry C, et al. Among authors: leng n. PLoS Comput Biol. 2019 Dec 9;15(12):e1007543. doi: 10.1371/journal.pcbi.1007543. eCollection 2019 Dec. PLoS Comput Biol. 2019. PMID: 31815944 Free PMC article.
Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.
Stewart R, Rascón CA, Tian S, Nie J, Barry C, Chu LF, Ardalani H, Wagner RJ, Probasco MD, Bolin JM, Leng N, Sengupta S, Volkmer M, Habermann B, Tanaka EM, Thomson JA, Dewey CN. Stewart R, et al. Among authors: leng n. PLoS Comput Biol. 2013;9(3):e1002936. doi: 10.1371/journal.pcbi.1002936. Epub 2013 Mar 7. PLoS Comput Biol. 2013. PMID: 23505351 Free PMC article.
Functional characterization of human pluripotent stem cell-derived arterial endothelial cells.
Zhang J, Chu LF, Hou Z, Schwartz MP, Hacker T, Vickerman V, Swanson S, Leng N, Nguyen BK, Elwell A, Bolin J, Brown ME, Stewart R, Burlingham WJ, Murphy WL, Thomson JA. Zhang J, et al. Among authors: leng n. Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):E6072-E6078. doi: 10.1073/pnas.1702295114. Epub 2017 Jul 10. Proc Natl Acad Sci U S A. 2017. PMID: 28696312 Free PMC article.
86 results