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Page 1
PhycoCosm, a comparative algal genomics resource.
Grigoriev IV, Hayes RD, Calhoun S, Kamel B, Wang A, Ahrendt S, Dusheyko S, Nikitin R, Mondo SJ, Salamov A, Shabalov I, Kuo A. Grigoriev IV, et al. Among authors: ahrendt s. Nucleic Acids Res. 2021 Jan 8;49(D1):D1004-D1011. doi: 10.1093/nar/gkaa898. Nucleic Acids Res. 2021. PMID: 33104790 Free PMC article.
Widespread adenine N6-methylation of active genes in fungi.
Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV. Mondo SJ, et al. Among authors: ahrendt sr. Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8. Nat Genet. 2017. PMID: 28481340
Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga.
Mäkelä MR, Peng M, Granchi Z, Chin-A-Woeng T, Hegi R, van Pelt SI, Ahrendt S, Riley R, Hainaut M, Henrissat B, Grigoriev IV, de Vries RP, Hildén KS. Mäkelä MR, et al. Among authors: ahrendt s. Genome Announc. 2018 Apr 5;6(14):e01414-17. doi: 10.1128/genomeA.01414-17. Genome Announc. 2018. PMID: 29622620 Free PMC article.
Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola.
Wu B, Gaskell J, Held BW, Toapanta C, Vuong T, Ahrendt S, Lipzen A, Zhang J, Schilling JS, Master E, Grigoriev IV, Blanchette RA, Cullen D, Hibbett DS. Wu B, et al. Among authors: ahrendt s. Appl Environ Microbiol. 2018 Aug 1;84(16):e00991-18. doi: 10.1128/AEM.00991-18. Print 2018 Aug 15. Appl Environ Microbiol. 2018. Retracted and republished in: Appl Environ Microbiol. 2021 Jul 27;87(16):e0032921. doi: 10.1128/AEM.00329-21 Retraction in: Appl Environ Microbiol. 2021 Jul 27;87(16):e0033021. doi: 10.1128/AEM.00330-21 PMID: 29884757 Free PMC article. Retracted and republished. Retracted.
Leveraging single-cell genomics to expand the fungal tree of life.
Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng JF, Woyke T, Pelin A, Henrissat B, Reynolds NK, Benny GL, Smith ME, James TY, Grigoriev IV. Ahrendt SR, et al. Nat Microbiol. 2018 Dec;3(12):1417-1428. doi: 10.1038/s41564-018-0261-0. Epub 2018 Oct 8. Nat Microbiol. 2018. PMID: 30297742 Free PMC article.
Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi.
Wu B, Gaskell J, Zhang J, Toapanta C, Ahrendt S, Grigoriev IV, Blanchette RA, Schilling JS, Master E, Cullen D, Hibbett DS. Wu B, et al. Among authors: ahrendt s. ISME J. 2019 Jun;13(6):1391-1403. doi: 10.1038/s41396-019-0359-2. Epub 2019 Feb 4. ISME J. 2019. Retraction in: ISME J. 2022 Jan;16(1):322. doi: 10.1038/s41396-021-01156-w PMID: 30718807 Free PMC article. Retracted.
Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens.
Casado López S, Peng M, Daly P, Andreopoulos B, Pangilinan J, Lipzen A, Riley R, Ahrendt S, Ng V, Barry K, Daum C, Grigoriev IV, Hildén KS, Mäkelä MR, de Vries RP. Casado López S, et al. Among authors: ahrendt s. Microbiol Resour Announc. 2019 May 2;8(18):e00264-19. doi: 10.1128/MRA.00264-19. Microbiol Resour Announc. 2019. PMID: 31048399 Free PMC article.
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus.
Miyauchi S, Hage H, Drula E, Lesage-Meessen L, Berrin JG, Navarro D, Favel A, Chaduli D, Grisel S, Haon M, Piumi F, Levasseur A, Lomascolo A, Ahrendt S, Barry K, LaButti KM, Chevret D, Daum C, Mariette J, Klopp C, Cullen D, de Vries RP, Gathman AC, Hainaut M, Henrissat B, Hildén KS, Kües U, Lilly W, Lipzen A, Mäkelä MR, Martinez AT, Morel-Rouhier M, Morin E, Pangilinan J, Ram AFJ, Wösten HAB, Ruiz-Dueñas FJ, Riley R, Record E, Grigoriev IV, Rosso MN. Miyauchi S, et al. Among authors: ahrendt s. DNA Res. 2020 Apr 1;27(2):dsaa011. doi: 10.1093/dnares/dsaa011. DNA Res. 2020. PMID: 32531032 Free PMC article.
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, Martínez AT, Baldrian P, Štursová M, Martínez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN. Hage H, et al. Among authors: ahrendt s. Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423. Epub 2021 Feb 15. Environ Microbiol. 2021. PMID: 33538380 Free PMC article.
A single-cell genomics pipeline for environmental microbial eukaryotes.
Ciobanu D, Clum A, Ahrendt S, Andreopoulos WB, Salamov A, Chan S, Quandt CA, Foster B, Meier-Kolthoff JP, Tang YT, Schwientek P, Benny GL, Smith ME, Bauer D, Deshpande S, Barry K, Copeland A, Singer SW, Woyke T, Grigoriev IV, James TY, Cheng JF. Ciobanu D, et al. Among authors: ahrendt s. iScience. 2021 Mar 10;24(4):102290. doi: 10.1016/j.isci.2021.102290. eCollection 2021 Apr 23. iScience. 2021. PMID: 33870123 Free PMC article.
180 results