Orengo CA - Search Results

1

Dynamic changes in the brain protein interaction network correlates with progression of Aβ42 pathology in Drosophila.

Scholes HM, Cryar A, Kerr F, Sutherland D, Gethings LA, Vissers JPC, Lees JG, Orengo CA, Partridge L, Thalassinos K. Scholes HM, et al. Among authors: orengo ca. Sci Rep. 2020 Oct 28;10(1):18517. doi: 10.1038/s41598-020-74748-9. Sci Rep. 2020. PMID: 33116184 Free PMC article.

2

The evolution of protein functions and networks: a family-centric approach.

Dessailly BH, Reid AJ, Yeats C, Lees JG, Cuff A, Orengo CA. Dessailly BH, et al. Among authors: orengo ca. Biochem Soc Trans. 2009 Aug;37(Pt 4):745-50. doi: 10.1042/BST0370745. Biochem Soc Trans. 2009. PMID: 19614587

3

Systematic computational prediction of protein interaction networks.

Lees JG, Heriche JK, Morilla I, Ranea JA, Orengo CA. Lees JG, et al. Among authors: orengo ca. Phys Biol. 2011 Jun;8(3):035008. doi: 10.1088/1478-3975/8/3/035008. Epub 2011 May 13. Phys Biol. 2011. PMID: 21572181

4

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.

Sillitoe I, Cuff AL, Dessailly BH, Dawson NL, Furnham N, Lee D, Lees JG, Lewis TE, Studer RA, Rentzsch R, Yeats C, Thornton JM, Orengo CA. Sillitoe I, et al. Among authors: orengo ca. Nucleic Acids Res. 2013 Jan;41(Database issue):D490-8. doi: 10.1093/nar/gks1211. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203873 Free PMC article.

5

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.

Lees JG, Lee D, Studer RA, Dawson NL, Sillitoe I, Das S, Yeats C, Dessailly BH, Rentzsch R, Orengo CA. Lees JG, et al. Among authors: orengo ca. Nucleic Acids Res. 2014 Jan;42(Database issue):D240-5. doi: 10.1093/nar/gkt1205. Epub 2013 Nov 21. Nucleic Acids Res. 2014. PMID: 24270792 Free PMC article.

6

CATH: comprehensive structural and functional annotations for genome sequences.

Sillitoe I, Lewis TE, Cuff A, Das S, Ashford P, Dawson NL, Furnham N, Laskowski RA, Lee D, Lees JG, Lehtinen S, Studer RA, Thornton J, Orengo CA. Sillitoe I, et al. Among authors: orengo ca. Nucleic Acids Res. 2015 Jan;43(Database issue):D376-81. doi: 10.1093/nar/gku947. Epub 2014 Oct 27. Nucleic Acids Res. 2015. PMID: 25348408 Free PMC article.

7

CATH FunFHMMer web server: protein functional annotations using functional family assignments.

Das S, Sillitoe I, Lee D, Lees JG, Dawson NL, Ward J, Orengo CA. Das S, et al. Among authors: orengo ca. Nucleic Acids Res. 2015 Jul 1;43(W1):W148-53. doi: 10.1093/nar/gkv488. Epub 2015 May 11. Nucleic Acids Res. 2015. PMID: 25964299 Free PMC article.

8

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.

Das S, Lee D, Sillitoe I, Dawson NL, Lees JG, Orengo CA. Das S, et al. Among authors: orengo ca. Bioinformatics. 2015 Nov 1;31(21):3460-7. doi: 10.1093/bioinformatics/btv398. Epub 2015 Jul 2. Bioinformatics. 2015. PMID: 26139634 Free PMC article.

9

Identifying and characterising key alternative splicing events in Drosophila development.

Lees JG, Ranea JA, Orengo CA. Lees JG, et al. Among authors: orengo ca. BMC Genomics. 2015 Aug 16;16(1):608. doi: 10.1186/s12864-015-1674-2. BMC Genomics. 2015. PMID: 26275604 Free PMC article.

10

Gene3D: expanding the utility of domain assignments.

Lam SD, Dawson NL, Das S, Sillitoe I, Ashford P, Lee D, Lehtinen S, Orengo CA, Lees JG. Lam SD, et al. Among authors: orengo ca. Nucleic Acids Res. 2016 Jan 4;44(D1):D404-9. doi: 10.1093/nar/gkv1231. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578585 Free PMC article.

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