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4D nucleome modeling.
Di Stefano M, Paulsen J, Jost D, Marti-Renom MA. Di Stefano M, et al. Curr Opin Genet Dev. 2021 Apr;67:25-32. doi: 10.1016/j.gde.2020.10.004. Epub 2020 Nov 27. Curr Opin Genet Dev. 2021. PMID: 33253996 Free PMC article. Review.
Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions.
Cattoni DI, Cardozo Gizzi AM, Georgieva M, Di Stefano M, Valeri A, Chamousset D, Houbron C, Déjardin S, Fiche JB, González I, Chang JM, Sexton T, Marti-Renom MA, Bantignies F, Cavalli G, Nollmann M. Cattoni DI, et al. Nat Commun. 2017 Nov 24;8(1):1753. doi: 10.1038/s41467-017-01962-x. Nat Commun. 2017. PMID: 29170434 Free PMC article.
Challenges and guidelines toward 4D nucleome data and model standards.
Marti-Renom MA, Almouzni G, Bickmore WA, Bystricky K, Cavalli G, Fraser P, Gasser SM, Giorgetti L, Heard E, Nicodemi M, Nollmann M, Orozco M, Pombo A, Torres-Padilla ME. Marti-Renom MA, et al. Nat Genet. 2018 Oct;50(10):1352-1358. doi: 10.1038/s41588-018-0236-3. Epub 2018 Sep 27. Nat Genet. 2018. PMID: 30262815 Free article. Review.
Hierarchical chromatin organization detected by TADpole.
Soler-Vila P, Cuscó P, Farabella I, Di Stefano M, Marti-Renom MA. Soler-Vila P, et al. Nucleic Acids Res. 2020 Apr 17;48(7):e39. doi: 10.1093/nar/gkaa087. Nucleic Acids Res. 2020. PMID: 32083658 Free PMC article.
4D Genome Rewiring during Oncogene-Induced and Replicative Senescence.
Sati S, Bonev B, Szabo Q, Jost D, Bensadoun P, Serra F, Loubiere V, Papadopoulos GL, Rivera-Mulia JC, Fritsch L, Bouret P, Castillo D, Gelpi JL, Orozco M, Vaillant C, Pellestor F, Bantignies F, Marti-Renom MA, Gilbert DM, Lemaitre JM, Cavalli G. Sati S, et al. Mol Cell. 2020 May 7;78(3):522-538.e9. doi: 10.1016/j.molcel.2020.03.007. Epub 2020 Mar 26. Mol Cell. 2020. PMID: 32220303 Free PMC article.
127 results