Berest I - Search Results

1

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis.

Ranzoni AM, Tangherloni A, Berest I, Riva SG, Myers B, Strzelecka PM, Xu J, Panada E, Mohorianu I, Zaugg JB, Cvejic A. Ranzoni AM, et al. Among authors: berest i. Cell Stem Cell. 2021 Mar 4;28(3):472-487.e7. doi: 10.1016/j.stem.2020.11.015. Epub 2020 Dec 21. Cell Stem Cell. 2021. PMID: 33352111 Free PMC article.

2

TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells.

Rasmussen KD, Berest I, Keβler S, Nishimura K, Simón-Carrasco L, Vassiliou GS, Pedersen MT, Christensen J, Zaugg JB, Helin K. Rasmussen KD, et al. Among authors: berest i. Genome Res. 2019 Apr;29(4):564-575. doi: 10.1101/gr.239277.118. Epub 2019 Feb 22. Genome Res. 2019. PMID: 30796038 Free PMC article.

3

Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF.

Berest I, Arnold C, Reyes-Palomares A, Palla G, Rasmussen KD, Giles H, Bruch PM, Huber W, Dietrich S, Helin K, Zaugg JB. Berest I, et al. Cell Rep. 2019 Dec 3;29(10):3147-3159.e12. doi: 10.1016/j.celrep.2019.10.106. Cell Rep. 2019. PMID: 31801079 Free article.

4

Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension.

Reyes-Palomares A, Gu M, Grubert F, Berest I, Sa S, Kasowski M, Arnold C, Shuai M, Srivas R, Miao S, Li D, Snyder MP, Rabinovitch M, Zaugg JB. Reyes-Palomares A, et al. Among authors: berest i. Nat Commun. 2020 Apr 3;11(1):1673. doi: 10.1038/s41467-020-15463-x. Nat Commun. 2020. PMID: 32245974 Free PMC article.

5

Drug-microenvironment perturbations reveal resistance mechanisms and prognostic subgroups in CLL.

Bruch PM, Giles HA, Kolb C, Herbst SA, Becirovic T, Roider T, Lu J, Scheinost S, Wagner L, Huellein J, Berest I, Kriegsmann M, Kriegsmann K, Zgorzelski C, Dreger P, Zaugg JB, Müller-Tidow C, Zenz T, Huber W, Dietrich S. Bruch PM, et al. Among authors: berest i. Mol Syst Biol. 2022 Aug;18(8):e10855. doi: 10.15252/msb.202110855. Mol Syst Biol. 2022. PMID: 35959629 Free PMC article.

6

Expression of galectin-1 in malignant tumors.

Demydenko D, Berest I. Demydenko D, et al. Among authors: berest i. Exp Oncol. 2009 Jun;31(2):74-9. Exp Oncol. 2009. PMID: 19550395 Review.

7

[Preoperative protective preparation of the nasal mucosa of rhinological patients].

Berest IE. Berest IE. Vestn Otorinolaringol. 2024;89(5):23-28. doi: 10.17116/otorino20248905123. Vestn Otorinolaringol. 2024. PMID: 39545757 Russian.

8

Inflammatory Mediators Suppress FGFR2 Expression in Human Keratinocytes to Promote Inflammation.

Ferrarese L, Koch M, Baumann A, Bento-Lopes L, Wüst D, Berest I, Kopf M, Werner S. Ferrarese L, et al. Among authors: berest i. Mol Cell Biol. 2024;44(11):489-504. doi: 10.1080/10985549.2024.2399766. Epub 2024 Sep 28. Mol Cell Biol. 2024. PMID: 39340759 Free PMC article.

9

Tuft cell IL-17RB restrains IL-25 bioavailability and reveals context-dependent ILC2 hypoproliferation.

Feng X, Andersson T, Gschwend J, Flüchter P, Berest I, Muff JL, Carchidi D, Lechner A, de Tenorio JC, Brander N, Boehm U, Klose CSN, Artis D, Leinders-Zufall T, Zufall F, Schneider C. Feng X, et al. Among authors: berest i. bioRxiv [Preprint]. 2024 Mar 8:2024.03.04.583299. doi: 10.1101/2024.03.04.583299. bioRxiv. 2024. PMID: 38496438 Free PMC article. Preprint.

10

Integration of scATAC-Seq with scRNA-Seq Data.

Berest I, Tangherloni A. Berest I, et al. Methods Mol Biol. 2023;2584:293-310. doi: 10.1007/978-1-0716-2756-3_15. Methods Mol Biol. 2023. PMID: 36495457

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