Mazumder A - Search Results

1

RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding.

Mazumder A, Wang A, Uhm H, Ebright RH, Kapanidis AN. Mazumder A, et al. Nucleic Acids Res. 2021 Mar 18;49(5):2790-2802. doi: 10.1093/nar/gkab074. Nucleic Acids Res. 2021. PMID: 33589919 Free PMC article.

2

Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and Staudinger-Bertozzi ligation.

Chakraborty A, Mazumder A, Lin M, Hasemeyer A, Xu Q, Wang D, Ebright YW, Ebright RH. Chakraborty A, et al. Among authors: mazumder a. Methods Mol Biol. 2015;1276:101-31. doi: 10.1007/978-1-4939-2392-2_6. Methods Mol Biol. 2015. PMID: 25665560 Free PMC article.

3

Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3).

Lin W, Das K, Degen D, Mazumder A, Duchi D, Wang D, Ebright YW, Ebright RY, Sineva E, Gigliotti M, Srivastava A, Mandal S, Jiang Y, Liu Y, Yin R, Zhang Z, Eng ET, Thomas D, Donadio S, Zhang H, Zhang C, Kapanidis AN, Ebright RH. Lin W, et al. Among authors: mazumder a. Mol Cell. 2018 Apr 5;70(1):60-71.e15. doi: 10.1016/j.molcel.2018.02.026. Epub 2018 Mar 29. Mol Cell. 2018. PMID: 29606590 Free PMC article.

4

The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp.

Duchi D, Mazumder A, Malinen AM, Ebright RH, Kapanidis AN. Duchi D, et al. Among authors: mazumder a. Nucleic Acids Res. 2018 Aug 21;46(14):7284-7295. doi: 10.1093/nar/gky482. Nucleic Acids Res. 2018. PMID: 29878276 Free PMC article.

5

Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms.

Mazumder A, Kapanidis AN. Mazumder A, et al. J Mol Biol. 2019 Sep 20;431(20):3947-3959. doi: 10.1016/j.jmb.2019.04.046. Epub 2019 May 11. J Mol Biol. 2019. PMID: 31082441 Free PMC article. Review.

6

Confinement-Free Wide-Field Ratiometric Tracking of Single Fluorescent Molecules.

Gilboa B, Jing B, Cui TJ, Sow M, Plochowietz A, Mazumder A, Kapanidis AN. Gilboa B, et al. Among authors: mazumder a. Biophys J. 2019 Dec 3;117(11):2141-2153. doi: 10.1016/j.bpj.2019.10.033. Epub 2019 Oct 31. Biophys J. 2019. PMID: 31711608 Free PMC article.

7

Closing and opening of the RNA polymerase trigger loop.

Mazumder A, Lin M, Kapanidis AN, Ebright RH. Mazumder A, et al. Proc Natl Acad Sci U S A. 2020 Jul 7;117(27):15642-15649. doi: 10.1073/pnas.1920427117. Epub 2020 Jun 22. Proc Natl Acad Sci U S A. 2020. PMID: 32571927 Free PMC article.

8

Transcription initiation at a consensus bacterial promoter proceeds via a 'bind-unwind-load-and-lock' mechanism.

Mazumder A, Ebright RH, Kapanidis AN. Mazumder A, et al. Elife. 2021 Oct 11;10:e70090. doi: 10.7554/eLife.70090. Elife. 2021. PMID: 34633286 Free PMC article.

9

Bleaching-resistant, Near-continuous Single-molecule Fluorescence and FRET Based on Fluorogenic and Transient DNA Binding.

Kümmerlin M, Mazumder A, Kapanidis AN. Kümmerlin M, et al. Among authors: mazumder a. Chemphyschem. 2023 Jun 15;24(12):e202300175. doi: 10.1002/cphc.202300175. Epub 2023 Apr 12. Chemphyschem. 2023. PMID: 37043705 Free PMC article.

10

Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.

Nova IC, Craig JM, Mazumder A, Laszlo AH, Derrington IM, Noakes MT, Brinkerhoff H, Yang S, Vahedian-Movahed H, Li L, Zhang Y, Bowman JL, Huang JR, Mount JW, Ebright RH, Gundlach JH. Nova IC, et al. Among authors: mazumder a. Proc Natl Acad Sci U S A. 2024 Jul 16;121(29):e2321017121. doi: 10.1073/pnas.2321017121. Epub 2024 Jul 11. Proc Natl Acad Sci U S A. 2024. PMID: 38990947

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

601 results

Search Page

Filters