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Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Mayer G, Müller W, Schork K, Uszkoreit J, Weidemann A, Wittig U, Rey M, Quast C, Felden J, Glöckner FO, Lange M, Arend D, Beier S, Junker A, Scholz U, Schüler D, Kestler HA, Wibberg D, Pühler A, Twardziok S, Eils J, Eils R, Hoffmann S, Eisenacher M, Turewicz M. Mayer G, et al. Among authors: junker a. Brief Bioinform. 2021 Sep 2;22(5):bbab010. doi: 10.1093/bib/bbab010. Brief Bioinform. 2021. PMID: 33589928 Free PMC article.
MetaCrop 2.0: managing and exploring information about crop plant metabolism.
Schreiber F, Colmsee C, Czauderna T, Grafahrend-Belau E, Hartmann A, Junker A, Junker BH, Klapperstück M, Scholz U, Weise S. Schreiber F, et al. Among authors: junker bh, junker a. Nucleic Acids Res. 2012 Jan;40(Database issue):D1173-7. doi: 10.1093/nar/gkr1004. Epub 2011 Nov 15. Nucleic Acids Res. 2012. PMID: 22086948 Free PMC article.
Measures for interoperability of phenotypic data: minimum information requirements and formatting.
Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone SA, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P. Ćwiek-Kupczyńska H, et al. Among authors: junker a. Plant Methods. 2016 Nov 9;12:44. doi: 10.1186/s13007-016-0144-4. eCollection 2016. Plant Methods. 2016. PMID: 27843484 Free PMC article.
Programmatic Access to FAIRified Digital Plant Genetic Resources.
Ghaffar M, Schüler D, König P, Arend D, Junker A, Scholz U, Lange M. Ghaffar M, et al. Among authors: junker a. J Integr Bioinform. 2020 Jan 8;16(4):20190060. doi: 10.1515/jib-2019-0060. J Integr Bioinform. 2020. PMID: 31913851 Free PMC article.
Enabling reusability of plant phenomic datasets with MIAPPE 1.1.
Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN, Chaves I, Coppens F, Cornut G, Costa BV, Ćwiek-Kupczyńska H, Droesbeke B, Finkers R, Gruden K, Junker A, King GJ, Krajewski P, Lange M, Laporte MA, Michotey C, Oppermann M, Ostler R, Poorter H, Ramı Rez-Gonzalez R, Ramšak Ž, Reif JC, Rocca-Serra P, Sansone SA, Scholz U, Tardieu F, Uauy C, Usadel B, Visser RGF, Weise S, Kersey PJ, Miguel CM, Adam-Blondon AF, Pommier C. Papoutsoglou EA, et al. Among authors: junker a. New Phytol. 2020 Jul;227(1):260-273. doi: 10.1111/nph.16544. Epub 2020 Apr 25. New Phytol. 2020. PMID: 32171029 Free PMC article.
isa4j: a scalable Java library for creating ISA-Tab metadata.
Psaroudakis D, Liu F, König P, Scholz U, Junker A, Lange M, Arend D. Psaroudakis D, et al. Among authors: junker a. F1000Res. 2020 Dec 3;9:ELIXIR-1388. doi: 10.12688/f1000research.27188.1. eCollection 2020. F1000Res. 2020. PMID: 33728038 Free PMC article.
402 results