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Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Mayer G, Müller W, Schork K, Uszkoreit J, Weidemann A, Wittig U, Rey M, Quast C, Felden J, Glöckner FO, Lange M, Arend D, Beier S, Junker A, Scholz U, Schüler D, Kestler HA, Wibberg D, Pühler A, Twardziok S, Eils J, Eils R, Hoffmann S, Eisenacher M, Turewicz M. Mayer G, et al. Among authors: weidemann a. Brief Bioinform. 2021 Sep 2;22(5):bbab010. doi: 10.1093/bib/bbab010. Brief Bioinform. 2021. PMID: 33589928 Free PMC article.
Data management and data enrichment for systems biology projects.
Wittig U, Rey M, Weidemann A, Müller W. Wittig U, et al. Among authors: weidemann a. J Biotechnol. 2017 Nov 10;261:229-237. doi: 10.1016/j.jbiotec.2017.06.007. Epub 2017 Jun 10. J Biotechnol. 2017. PMID: 28606610 Free article. Review.
Challenges for an enzymatic reaction kinetics database.
Wittig U, Rey M, Kania R, Bittkowski M, Shi L, Golebiewski M, Weidemann A, Müller W, Rojas I. Wittig U, et al. Among authors: weidemann a. FEBS J. 2014 Jan;281(2):572-82. doi: 10.1111/febs.12562. Epub 2013 Oct 25. FEBS J. 2014. PMID: 24165050 Free article. Review.
SABIO-RK--database for biochemical reaction kinetics.
Wittig U, Kania R, Golebiewski M, Rey M, Shi L, Jong L, Algaa E, Weidemann A, Sauer-Danzwith H, Mir S, Krebs O, Bittkowski M, Wetsch E, Rojas I, Müller W. Wittig U, et al. Among authors: weidemann a. Nucleic Acids Res. 2012 Jan;40(Database issue):D790-6. doi: 10.1093/nar/gkr1046. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102587 Free PMC article.
Storing and annotating of kinetic data.
Rojas I, Golebiewski M, Kania R, Krebs O, Mir S, Weidemann A, Wittig U. Rojas I, et al. Among authors: weidemann a. In Silico Biol. 2007;7(2 Suppl):S37-44. In Silico Biol. 2007. PMID: 17822389
EnzymeML-a data exchange format for biocatalysis and enzymology.
Range J, Halupczok C, Lohmann J, Swainston N, Kettner C, Bergmann FT, Weidemann A, Wittig U, Schnell S, Pleiss J. Range J, et al. Among authors: weidemann a. FEBS J. 2022 Oct;289(19):5864-5874. doi: 10.1111/febs.16318. Epub 2021 Dec 26. FEBS J. 2022. PMID: 34890097 Free article. Review.
Enzyme kinetics informatics: from instrument to browser.
Swainston N, Golebiewski M, Messiha HL, Malys N, Kania R, Kengne S, Krebs O, Mir S, Sauer-Danzwith H, Smallbone K, Weidemann A, Wittig U, Kell DB, Mendes P, Müller W, Paton NW, Rojas I. Swainston N, et al. Among authors: weidemann a. FEBS J. 2010 Sep;277(18):3769-79. doi: 10.1111/j.1742-4658.2010.07778.x. Epub 2010 Aug 3. FEBS J. 2010. PMID: 20738395 Free article.
232 results