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Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data.
Parker MD, Lindsey BB, Leary S, Gaudieri S, Chopra A, Wyles M, Angyal A, Green LR, Parsons P, Tucker RM, Brown R, Groves D, Johnson K, Carrilero L, Heffer J, Partridge DG, Evans C, Raza M, Keeley AJ, Smith N, Filipe ADS, Shepherd JG, Davis C, Bennett S, Sreenu VB, Kohl A, Aranday-Cortes E, Tong L, Nichols J, Thomson EC; COVID-19 Genomics UK (COG-UK) Consortium; Wang D, Mallal S, de Silva TI. Parker MD, et al. Among authors: johnson k. Genome Res. 2021 Apr;31(4):645-658. doi: 10.1101/gr.268110.120. Epub 2021 Mar 15. Genome Res. 2021. PMID: 33722935 Free PMC article.
Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections.
Parker MD, Stewart H, Shehata OM, Lindsey BB, Shah DR, Hsu S, Keeley AJ, Partridge DG, Leary S, Cope A, State A, Johnson K, Ali N, Raghei R, Heffer J, Smith N, Zhang P, Gallis M, Louka SF, Hornsby HR, Alamri H, Whiteley M, Foulkes BH, Christou S, Wolverson P, Pohare M, Hansford SE, Green LR, Evans C, Raza M, Wang D, Firth AE, Edgar JR, Gaudieri S, Mallal S; COVID-19 Genomics UK (COG-UK) consortium; Collins MO, Peden AA, de Silva TI. Parker MD, et al. Among authors: johnson k. Commun Biol. 2022 Jul 5;5(1):666. doi: 10.1038/s42003-022-03565-9. Commun Biol. 2022. PMID: 35790808 Free PMC article.
Diagnosis of SARS-CoV-2 Infection with LamPORE, a High-Throughput Platform Combining Loop-Mediated Isothermal Amplification and Nanopore Sequencing.
Peto L, Rodger G, Carter DP, Osman KL, Yavuz M, Johnson K, Raza M, Parker MD, Wyles MD, Andersson M, Justice A, Vaughan A, Hoosdally S, Stoesser N, Matthews PC, Eyre DW, Peto TEA, Carroll MW, de Silva TI, Crook DW, Evans CM, Pullan ST. Peto L, et al. Among authors: johnson k. J Clin Microbiol. 2021 May 19;59(6):e03271-20. doi: 10.1128/JCM.03271-20. Print 2021 May 19. J Clin Microbiol. 2021. PMID: 33782112 Free PMC article.
SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study.
Stirrup O, Boshier F, Venturini C, Guerra-Assunção JA, Alcolea-Medina A, Beckett A, Charalampous T, da Silva Filipe A, Glaysher S, Khan T, Kulasegaran Shylini R, Kele B, Monahan I, Mollett G, Parker M, Pelosi E, Randell P, Roy S, Taylor J, Weller S, Wilson-Davies E, Wade P, Williams R; COG-UK-HOCI Variant substudy consortium; COVID-19 Genomics UK (COG-UK) consortium; Copas A, Cutino-Moguel MT, Freemantle N, Hayward AC, Holmes A, Hughes J, Mahungu T, Nebbia G, Partridge D, Pope C, Price J, Robson S, Saeed K, de Silva T, Snell L, Thomson E, Witney AA, Breuer J. Stirrup O, et al. BMJ Open Respir Res. 2021 Sep;8(1):e001029. doi: 10.1136/bmjresp-2021-001029. BMJ Open Respir Res. 2021. PMID: 34544733 Free PMC article.
Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
Lindsey BB, Villabona-Arenas CJ, Campbell F, Keeley AJ, Parker MD, Shah DR, Parsons H, Zhang P, Kakkar N, Gallis M, Foulkes BH, Wolverson P, Louka SF, Christou S, State A, Johnson K, Raza M, Hsu S, Jombart T, Cori A; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans CM, Partridge DG, Atkins KE, Hué S, de Silva TI. Lindsey BB, et al. Among authors: johnson k. Nat Commun. 2022 Feb 3;13(1):671. doi: 10.1038/s41467-022-28291-y. Nat Commun. 2022. PMID: 35115517 Free PMC article.
Descriptive comparison of admission characteristics between pandemic waves and multivariable analysis of the association of the Alpha variant (B.1.1.7 lineage) of SARS-CoV-2 with disease severity in inner London.
Snell LB, Wang W, Alcolea-Medina A, Charalampous T, Batra R, de Jongh L, Higgins F, Nebbia G; COG-UK HOCI Investigators; Wang Y, Edgeworth J, Curcin V. Snell LB, et al. BMJ Open. 2022 Feb 8;12(2):e055474. doi: 10.1136/bmjopen-2021-055474. BMJ Open. 2022. PMID: 35135773 Free PMC article.
Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
Lindsey BB, Villabona-Arenas CJ, Campbell F, Keeley AJ, Parker MD, Shah DR, Parsons H, Zhang P, Kakkar N, Gallis M, Foulkes BH, Wolverson P, Louka SF, Christou S, State A, Johnson K, Raza M, Hsu S, Jombart T, Cori A; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans CM, Partridge DG, Atkins KE, Hué S, de Silva TI. Lindsey BB, et al. Among authors: johnson k. Nat Commun. 2022 Feb 17;13(1):1013. doi: 10.1038/s41467-022-28681-2. Nat Commun. 2022. PMID: 35177648 Free PMC article. No abstract available.
Invalidation and Mental Health among Nonbinary Individuals.
Johnson KC, LeBlanc AJ, Dolezal C, Singh AA, Bockting WO. Johnson KC, et al. Psychol Sex Orientat Gend Divers. 2024 Sep;11(3):413-424. doi: 10.1037/sgd0000621. Epub 2023 Mar 16. Psychol Sex Orientat Gend Divers. 2024. PMID: 39600541
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