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6,671 results

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Page 1
CellRank for directed single-cell fate mapping.
Lange M, Bergen V, Klein M, Setty M, Reuter B, Bakhti M, Lickert H, Ansari M, Schniering J, Schiller HB, Pe'er D, Theis FJ. Lange M, et al. Among authors: klein m. Nat Methods. 2022 Feb;19(2):159-170. doi: 10.1038/s41592-021-01346-6. Epub 2022 Jan 13. Nat Methods. 2022. PMID: 35027767 Free PMC article.
Squidpy: a scalable framework for spatial omics analysis.
Palla G, Spitzer H, Klein M, Fischer D, Schaar AC, Kuemmerle LB, Rybakov S, Ibarra IL, Holmberg O, Virshup I, Lotfollahi M, Richter S, Theis FJ. Palla G, et al. Among authors: klein m. Nat Methods. 2022 Feb;19(2):171-178. doi: 10.1038/s41592-021-01358-2. Epub 2022 Jan 31. Nat Methods. 2022. PMID: 35102346 Free PMC article.
The scverse project provides a computational ecosystem for single-cell omics data analysis.
Virshup I, Bredikhin D, Heumos L, Palla G, Sturm G, Gayoso A, Kats I, Koutrouli M; Scverse Community; Berger B, Pe'er D, Regev A, Teichmann SA, Finotello F, Wolf FA, Yosef N, Stegle O, Theis FJ. Virshup I, et al. Nat Biotechnol. 2023 May;41(5):604-606. doi: 10.1038/s41587-023-01733-8. Nat Biotechnol. 2023. PMID: 37037904 No abstract available.
CellRank 2: unified fate mapping in multiview single-cell data.
Weiler P, Lange M, Klein M, Pe'er D, Theis F. Weiler P, et al. Among authors: klein m. Nat Methods. 2024 Jul;21(7):1196-1205. doi: 10.1038/s41592-024-02303-9. Epub 2024 Jun 13. Nat Methods. 2024. PMID: 38871986 Free PMC article.
Mapping lineage-traced cells across time points with moslin.
Lange M, Piran Z, Klein M, Spanjaard B, Klein D, Junker JP, Theis FJ, Nitzan M. Lange M, et al. Among authors: klein m, klein d. Genome Biol. 2024 Oct 21;25(1):277. doi: 10.1186/s13059-024-03422-4. Genome Biol. 2024. PMID: 39434128 Free PMC article.
Defining and benchmarking open problems in single-cell analysis.
Luecken MD, Gigante S, Burkhardt DB, Cannoodt R, Strobl DC, Markov NS, Zappia L, Palla G, Lewis W, Dimitrov D, Vinyard ME, Magruder DS, Andersson A, Dann E, Qin Q, Otto DJ, Klein M, Botvinnik OB, Deconinck L, Waldrant K; Open Problems Jamboree Members; Bloom JM, Pisco AO, Saez-Rodriguez J, Wulsin D, Pinello L, Saeys Y, Theis FJ, Krishnaswamy S. Luecken MD, et al. Among authors: klein m. Res Sq [Preprint]. 2024 Apr 4:rs.3.rs-4181617. doi: 10.21203/rs.3.rs-4181617/v1. Res Sq. 2024. PMID: 38645152 Free PMC article. Preprint.
Genome-wide association analyses identify distinct genetic architectures for age-related macular degeneration across ancestries.
Gorman BR, Voloudakis G, Igo RP Jr, Kinzy T, Halladay CW, Bigdeli TB, Zeng B, Venkatesh S, Cooke Bailey JN, Crawford DC, Markianos K, Dong F, Schreiner PA, Zhang W; VA Million Veteran Program; International AMD Genomics Consortium (IAMDGC); Hadi T, Anger MD, Stockwell A, Melles RB, Yin J, Choquet H, Kaye R, Patasova K, Patel PJ, Yaspan BL, Jorgenson E, Hysi PG, Lotery AJ, Gaziano JM, Tsao PS, Fliesler SJ, Sullivan JM, Greenberg PB, Wu WC, Assimes TL, Pyarajan S, Roussos P, Peachey NS, Iyengar SK. Gorman BR, et al. Nat Genet. 2024 Dec 2. doi: 10.1038/s41588-024-01764-0. Online ahead of print. Nat Genet. 2024. PMID: 39623103
6,671 results