Theis F - Search Results

1

Integrated intra- and intercellular signaling knowledge for multicellular omics analysis.

Türei D, Valdeolivas A, Gul L, Palacio-Escat N, Klein M, Ivanova O, Ölbei M, Gábor A, Theis F, Módos D, Korcsmáros T, Saez-Rodriguez J. Türei D, et al. Among authors: theis f. Mol Syst Biol. 2021 Mar;17(3):e9923. doi: 10.15252/msb.20209923. Mol Syst Biol. 2021. PMID: 33749993 Free PMC article.

2

Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling.

Wittmann DM, Krumsiek J, Saez-Rodriguez J, Lauffenburger DA, Klamt S, Theis FJ. Wittmann DM, et al. BMC Syst Biol. 2009 Sep 28;3:98. doi: 10.1186/1752-0509-3-98. BMC Syst Biol. 2009. PMID: 19785753 Free PMC article.

3

Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways.

Kowarsch A, Marr C, Schmidl D, Ruepp A, Theis FJ. Kowarsch A, et al. PLoS One. 2010 Jun 30;5(6):e11154. doi: 10.1371/journal.pone.0011154. PLoS One. 2010. PMID: 20614023 Free PMC article.

4

Whither systems medicine?

Apweiler R, Beissbarth T, Berthold MR, Blüthgen N, Burmeister Y, Dammann O, Deutsch A, Feuerhake F, Franke A, Hasenauer J, Hoffmann S, Höfer T, Jansen PL, Kaderali L, Klingmüller U, Koch I, Kohlbacher O, Kuepfer L, Lammert F, Maier D, Pfeifer N, Radde N, Rehm M, Roeder I, Saez-Rodriguez J, Sax U, Schmeck B, Schuppert A, Seilheimer B, Theis FJ, Vera J, Wolkenhauer O. Apweiler R, et al. Among authors: theis fj. Exp Mol Med. 2018 Mar 2;50(3):e453. doi: 10.1038/emm.2017.290. Exp Mol Med. 2018. PMID: 29497170 Free PMC article. Review.

5

Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection.

Fröhlich F, Reiser A, Fink L, Woschée D, Ligon T, Theis FJ, Rädler JO, Hasenauer J. Fröhlich F, et al. Among authors: theis fj. NPJ Syst Biol Appl. 2018 Dec 10;5:1. doi: 10.1038/s41540-018-0079-7. eCollection 2019. NPJ Syst Biol Appl. 2018. PMID: 30564456 Free PMC article.

6

Meeting the Challenges of High-Dimensional Single-Cell Data Analysis in Immunology.

Palit S, Heuser C, de Almeida GP, Theis FJ, Zielinski CE. Palit S, et al. Front Immunol. 2019 Jul 3;10:1515. doi: 10.3389/fimmu.2019.01515. eCollection 2019. Front Immunol. 2019. PMID: 31354705 Free PMC article. Review.

7

Predicting antigen specificity of single T cells based on TCR CDR3 regions.

Fischer DS, Wu Y, Schubert B, Theis FJ. Fischer DS, et al. Mol Syst Biol. 2020 Aug;16(8):e9416. doi: 10.15252/msb.20199416. Mol Syst Biol. 2020. PMID: 32779888 Free PMC article.

8

CellRank for directed single-cell fate mapping.

Lange M, Bergen V, Klein M, Setty M, Reuter B, Bakhti M, Lickert H, Ansari M, Schniering J, Schiller HB, Pe'er D, Theis FJ. Lange M, et al. Nat Methods. 2022 Feb;19(2):159-170. doi: 10.1038/s41592-021-01346-6. Epub 2022 Jan 13. Nat Methods. 2022. PMID: 35027767 Free PMC article.

9

Squidpy: a scalable framework for spatial omics analysis.

Palla G, Spitzer H, Klein M, Fischer D, Schaar AC, Kuemmerle LB, Rybakov S, Ibarra IL, Holmberg O, Virshup I, Lotfollahi M, Richter S, Theis FJ. Palla G, et al. Nat Methods. 2022 Feb;19(2):171-178. doi: 10.1038/s41592-021-01358-2. Epub 2022 Jan 31. Nat Methods. 2022. PMID: 35102346 Free PMC article.

10

Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation.

Brunner AD, Thielert M, Vasilopoulou C, Ammar C, Coscia F, Mund A, Hoerning OB, Bache N, Apalategui A, Lubeck M, Richter S, Fischer DS, Raether O, Park MA, Meier F, Theis FJ, Mann M. Brunner AD, et al. Among authors: theis fj. Mol Syst Biol. 2022 Mar;18(3):e10798. doi: 10.15252/msb.202110798. Mol Syst Biol. 2022. PMID: 35226415 Free PMC article.

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