Sorger PK - Search Results

1

Minerva: a light-weight, narrative image browser for multiplexed tissue images.

Hoffer J, Rashid R, Muhlich JL, Chen YA, Russell DPW, Ruokonen J, Krueger R, Pfister H, Santagata S, Sorger PK. Hoffer J, et al. Among authors: sorger pk. J Open Source Softw. 2020;5(54):2579. doi: 10.21105/joss.02579. Epub 2020 Oct 15. J Open Source Softw. 2020. PMID: 33768192 Free PMC article.

2

Flexible informatics for linking experimental data to mathematical models via DataRail.

Saez-Rodriguez J, Goldsipe A, Muhlich J, Alexopoulos LG, Millard B, Lauffenburger DA, Sorger PK. Saez-Rodriguez J, et al. Among authors: sorger pk. Bioinformatics. 2008 Mar 15;24(6):840-7. doi: 10.1093/bioinformatics/btn018. Epub 2008 Jan 24. Bioinformatics. 2008. PMID: 18218655 Free PMC article.

3

Fuzzy logic analysis of kinase pathway crosstalk in TNF/EGF/insulin-induced signaling.

Aldridge BB, Saez-Rodriguez J, Muhlich JL, Sorger PK, Lauffenburger DA. Aldridge BB, et al. Among authors: sorger pk. PLoS Comput Biol. 2009 Apr;5(4):e1000340. doi: 10.1371/journal.pcbi.1000340. Epub 2009 Apr 3. PLoS Comput Biol. 2009. PMID: 19343194 Free PMC article.

4

Adaptive informatics for multifactorial and high-content biological data.

Millard BL, Niepel M, Menden MP, Muhlich JL, Sorger PK. Millard BL, et al. Among authors: sorger pk. Nat Methods. 2011 Jun;8(6):487-93. doi: 10.1038/nmeth.1600. Epub 2011 Apr 24. Nat Methods. 2011. PMID: 21516115 Free PMC article.

5

Properties of cell death models calibrated and compared using Bayesian approaches.

Eydgahi H, Chen WW, Muhlich JL, Vitkup D, Tsitsiklis JN, Sorger PK. Eydgahi H, et al. Among authors: sorger pk. Mol Syst Biol. 2013;9:644. doi: 10.1038/msb.2012.69. Mol Syst Biol. 2013. PMID: 23385484 Free PMC article.

6

Programming biological models in Python using PySB.

Lopez CF, Muhlich JL, Bachman JA, Sorger PK. Lopez CF, et al. Among authors: sorger pk. Mol Syst Biol. 2013;9:646. doi: 10.1038/msb.2013.1. Mol Syst Biol. 2013. PMID: 23423320 Free PMC article.

7

Analysis of growth factor signaling in genetically diverse breast cancer lines.

Niepel M, Hafner M, Pace EA, Chung M, Chai DH, Zhou L, Muhlich JL, Schoeberl B, Sorger PK. Niepel M, et al. Among authors: sorger pk. BMC Biol. 2014 Mar 21;12:20. doi: 10.1186/1741-7007-12-20. BMC Biol. 2014. PMID: 24655548 Free PMC article.

8

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.

Duan Q, Flynn C, Niepel M, Hafner M, Muhlich JL, Fernandez NF, Rouillard AD, Tan CM, Chen EY, Golub TR, Sorger PK, Subramanian A, Ma'ayan A. Duan Q, et al. Among authors: sorger pk. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W449-60. doi: 10.1093/nar/gku476. Epub 2014 Jun 6. Nucleic Acids Res. 2014. PMID: 24906883 Free PMC article.

9

GRcalculator: an online tool for calculating and mining dose-response data.

Clark NA, Hafner M, Kouril M, Williams EH, Muhlich JL, Pilarczyk M, Niepel M, Sorger PK, Medvedovic M. Clark NA, et al. Among authors: sorger pk. BMC Cancer. 2017 Oct 24;17(1):698. doi: 10.1186/s12885-017-3689-3. BMC Cancer. 2017. PMID: 29065900 Free PMC article.

10

From word models to executable models of signaling networks using automated assembly.

Gyori BM, Bachman JA, Subramanian K, Muhlich JL, Galescu L, Sorger PK. Gyori BM, et al. Among authors: sorger pk. Mol Syst Biol. 2017 Nov 24;13(11):954. doi: 10.15252/msb.20177651. Mol Syst Biol. 2017. PMID: 29175850 Free PMC article.

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