Cormier MJ - Search Results

1

OncoGEMINI: software for investigating tumor variants from multiple biopsies with integrated cancer annotations.

Nicholas TJ, Cormier MJ, Huang X, Qiao Y, Marth GT, Quinlan AR. Nicholas TJ, et al. Among authors: cormier mj. Genome Med. 2021 Mar 26;13(1):46. doi: 10.1186/s13073-021-00854-6. Genome Med. 2021. PMID: 33771218 Free PMC article.

2

Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data.

Cormier MJ, Belyeu JR, Pedersen BS, Brown J, Köster J, Quinlan AR. Cormier MJ, et al. Nat Commun. 2021 Apr 12;12(1):2151. doi: 10.1038/s41467-021-22381-z. Nat Commun. 2021. PMID: 33846313 Free PMC article.

3

Samplot: a platform for structural variant visual validation and automated filtering.

Belyeu JR, Chowdhury M, Brown J, Pedersen BS, Cormier MJ, Quinlan AR, Layer RM. Belyeu JR, et al. Among authors: cormier mj. Genome Biol. 2021 May 25;22(1):161. doi: 10.1186/s13059-021-02380-5. Genome Biol. 2021. PMID: 34034781 Free PMC article.

4

Comprehensive variant calling from whole-genome sequencing identifies a complex inversion that disrupts ZFPM2 in familial congenital diaphragmatic hernia.

Nicholas TJ, Al-Sweel N, Farrell A, Mao R, Bayrak-Toydemir P, Miller CE, Bentley D, Palmquist R, Moore B, Hernandez EJ, Cormier MJ, Fredrickson E, Noble K, Rynearson S, Holt C, Karren MA, Bonkowsky JL, Tristani-Firouzi M, Yandell M, Marth G, Quinlan AR, Brunelli L, Toydemir RM, Shayota BJ, Carey JC, Boyden SE, Malone Jenkins S. Nicholas TJ, et al. Among authors: cormier mj. Mol Genet Genomic Med. 2022 Apr;10(4):e1888. doi: 10.1002/mgg3.1888. Epub 2022 Feb 4. Mol Genet Genomic Med. 2022. PMID: 35119225 Free PMC article.

5

Annotation of structural variants with reported allele frequencies and related metrics from multiple datasets using SVAFotate.

Nicholas TJ, Cormier MJ, Quinlan AR. Nicholas TJ, et al. Among authors: cormier mj. BMC Bioinformatics. 2022 Nov 16;23(1):490. doi: 10.1186/s12859-022-05008-y. BMC Bioinformatics. 2022. PMID: 36384437 Free PMC article.

6

Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies.

Cormier MJ, Pedersen BS, Bayrak-Toydemir P, Quinlan AR. Cormier MJ, et al. BMC Bioinformatics. 2022 Nov 14;23(1):482. doi: 10.1186/s12859-022-05041-x. BMC Bioinformatics. 2022. PMID: 36376793 Free PMC article.

7

SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences.

Pickett BD, Karlinsey SM, Penrod CE, Cormier MJ, Ebbert MT, Shiozawa DK, Whipple CJ, Ridge PG. Pickett BD, et al. Among authors: cormier mj. Bioinformatics. 2016 Sep 1;32(17):2707-9. doi: 10.1093/bioinformatics/btw298. Epub 2016 May 11. Bioinformatics. 2016. PMID: 27170037 Free PMC article.

8

Phenytoin overdose treated with hemodialysis using a high cut-off dialyzer.

Cormier MJ, Desmeules S, St-Onge M, Ghannoum M. Cormier MJ, et al. Hemodial Int. 2017 Jan;21(1):E13-E17. doi: 10.1111/hdi.12475. Epub 2016 Sep 6. Hemodial Int. 2017. PMID: 27596563

9

Expression of the Renilla reniformis luciferase gene in mammalian cells.

Lorenz WW, Cormier MJ, O'Kane DJ, Hua D, Escher AA, Szalay AA. Lorenz WW, et al. Among authors: cormier mj. J Biolumin Chemilumin. 1996 Jan-Feb;11(1):31-7. doi: 10.1002/(SICI)1099-1271(199601)11:1<31::AID-BIO398>3.0.CO;2-M. J Biolumin Chemilumin. 1996. PMID: 8686494

10

Primary structure of the Aequorea victoria green-fluorescent protein.

Prasher DC, Eckenrode VK, Ward WW, Prendergast FG, Cormier MJ. Prasher DC, et al. Among authors: cormier mj. Gene. 1992 Feb 15;111(2):229-33. doi: 10.1016/0378-1119(92)90691-h. Gene. 1992. PMID: 1347277

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