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Page 1
Compressed sensing for highly efficient imaging transcriptomics.
Cleary B, Simonton B, Bezney J, Murray E, Alam S, Sinha A, Habibi E, Marshall J, Lander ES, Chen F, Regev A. Cleary B, et al. Among authors: simonton b. Nat Biotechnol. 2021 Aug;39(8):936-942. doi: 10.1038/s41587-021-00883-x. Epub 2021 Apr 15. Nat Biotechnol. 2021. PMID: 33859401 Free PMC article.
Using viral load and epidemic dynamics to optimize pooled testing in resource constrained settings.
Cleary B, Hay JA, Blumenstiel B, Harden M, Cipicchio M, Bezney J, Simonton B, Hong D, Senghore M, Sesay AK, Gabriel S, Regev A, Mina MJ. Cleary B, et al. Among authors: simonton b. medRxiv [Preprint]. 2021 Jan 15:2020.05.01.20086801. doi: 10.1101/2020.05.01.20086801. medRxiv. 2021. Update in: Sci Transl Med. 2021 Apr 14;13(589):eabf1568. doi: 10.1126/scitranslmed.abf1568 PMID: 32511487 Free PMC article. Updated. Preprint.
Scalable genetic screening for regulatory circuits using compressed Perturb-seq.
Yao D, Binan L, Bezney J, Simonton B, Freedman J, Frangieh CJ, Dey K, Geiger-Schuller K, Eraslan B, Gusev A, Regev A, Cleary B. Yao D, et al. Among authors: simonton b. Nat Biotechnol. 2024 Aug;42(8):1282-1295. doi: 10.1038/s41587-023-01964-9. Epub 2023 Oct 23. Nat Biotechnol. 2024. PMID: 37872410 Free PMC article.
Novel antibody language model accelerates IgG screening and design for broad-spectrum antiviral therapy.
Almubarak HF, Tan W, Hoffmann AD, Sun Y, Wei J, El-Shennawy L, Squires JR, Dashzeveg NK, Simonton B, Jia Y, Iyer R, Xu Y, Nicolaescu V, Elli D, Randall GC, Schipma MJ, Swaminathan S, Ison MG, Liu H, Fang D, Shen Y. Almubarak HF, et al. Among authors: simonton b. bioRxiv [Preprint]. 2024 Aug 20:2024.03.01.582176. doi: 10.1101/2024.03.01.582176. bioRxiv. 2024. PMID: 38496411 Free PMC article. Preprint.
Epigenetic dysregulation in Alzheimer's disease peripheral immunity.
Ramakrishnan A, Piehl N, Simonton B, Parikh M, Zhang Z, Teregulova V, van Olst L, Gate D. Ramakrishnan A, et al. Among authors: simonton b. Neuron. 2024 Apr 17;112(8):1235-1248.e5. doi: 10.1016/j.neuron.2024.01.013. Epub 2024 Feb 9. Neuron. 2024. PMID: 38340719
Cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment.
Piehl N, van Olst L, Ramakrishnan A, Teregulova V, Simonton B, Zhang Z, Tapp E, Channappa D, Oh H, Losada PM, Rutledge J, Trelle AN, Mormino EC, Elahi F, Galasko DR, Henderson VW, Wagner AD, Wyss-Coray T, Gate D. Piehl N, et al. Among authors: simonton b. Cell. 2022 Dec 22;185(26):5028-5039.e13. doi: 10.1016/j.cell.2022.11.019. Epub 2022 Dec 13. Cell. 2022. PMID: 36516855 Free PMC article.
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