Kilburn D - Search Results

1

Sex chromosome transformation and the origin of a male-specific X chromosome in the creeping vole.

Couger MB, Roy SW, Anderson N, Gozashti L, Pirro S, Millward LS, Kim M, Kilburn D, Liu KJ, Wilson TM, Epps CW, Dizney L, Ruedas LA, Campbell P. Couger MB, et al. Among authors: kilburn d. Science. 2021 May 7;372(6542):592-600. doi: 10.1126/science.abg7019. Science. 2021. PMID: 33958470

2

A Multiplex Ligation Assay for miRNA Copy Number Profiling.

Kilburn D, Song Y, Wang TH, Liu KJ. Kilburn D, et al. Methods Mol Biol. 2017;1509:185-193. doi: 10.1007/978-1-4939-6524-3_17. Methods Mol Biol. 2017. PMID: 27826928

3

Determination of absolute expression profiles using multiplexed miRNA analysis.

Song Y, Kilburn D, Song JH, Cheng Y, Saeui CT, Cheung DG, Croce CM, Yarema KJ, Meltzer SJ, Liu KJ, Wang TH. Song Y, et al. Among authors: kilburn d. PLoS One. 2017 Jul 13;12(7):e0180988. doi: 10.1371/journal.pone.0180988. eCollection 2017. PLoS One. 2017. PMID: 28704432 Free PMC article.

4

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.

Shafin K, Pesout T, Lorig-Roach R, Haukness M, Olsen HE, Bosworth C, Armstrong J, Tigyi K, Maurer N, Koren S, Sedlazeck FJ, Marschall T, Mayes S, Costa V, Zook JM, Liu KJ, Kilburn D, Sorensen M, Munson KM, Vollger MR, Monlong J, Garrison E, Eichler EE, Salama S, Haussler D, Green RE, Akeson M, Phillippy A, Miga KH, Carnevali P, Jain M, Paten B. Shafin K, et al. Among authors: kilburn d. Nat Biotechnol. 2020 Sep;38(9):1044-1053. doi: 10.1038/s41587-020-0503-6. Epub 2020 May 4. Nat Biotechnol. 2020. PMID: 32686750 Free PMC article.

5

Molecular crowding stabilizes folded RNA structure by the excluded volume effect.

Kilburn D, Roh JH, Guo L, Briber RM, Woodson SA. Kilburn D, et al. J Am Chem Soc. 2010 Jun 30;132(25):8690-6. doi: 10.1021/ja101500g. J Am Chem Soc. 2010. PMID: 20521820 Free PMC article.

6

Increased ribozyme activity in crowded solutions.

Desai R, Kilburn D, Lee HT, Woodson SA. Desai R, et al. Among authors: kilburn d. J Biol Chem. 2014 Jan 31;289(5):2972-7. doi: 10.1074/jbc.M113.527861. Epub 2013 Dec 11. J Biol Chem. 2014. PMID: 24337582 Free PMC article.

7

Crowders perturb the entropy of RNA energy landscapes to favor folding.

Kilburn D, Roh JH, Behrouzi R, Briber RM, Woodson SA. Kilburn D, et al. J Am Chem Soc. 2013 Jul 10;135(27):10055-63. doi: 10.1021/ja4030098. Epub 2013 Jul 1. J Am Chem Soc. 2013. PMID: 23773075 Free PMC article.

8

Cooperative tertiary interaction network guides RNA folding.

Behrouzi R, Roh JH, Kilburn D, Briber RM, Woodson SA. Behrouzi R, et al. Among authors: kilburn d. Cell. 2012 Apr 13;149(2):348-57. doi: 10.1016/j.cell.2012.01.057. Cell. 2012. PMID: 22500801 Free PMC article.

9

Entropic stabilization of folded RNA in crowded solutions measured by SAXS.

Kilburn D, Behrouzi R, Lee HT, Sarkar K, Briber RM, Woodson SA. Kilburn D, et al. Nucleic Acids Res. 2016 Nov 2;44(19):9452-9461. doi: 10.1093/nar/gkw597. Epub 2016 Jul 4. Nucleic Acids Res. 2016. PMID: 27378777 Free PMC article.

10

Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme.

Lee HT, Kilburn D, Behrouzi R, Briber RM, Woodson SA. Lee HT, et al. Among authors: kilburn d. Nucleic Acids Res. 2015 Jan;43(2):1170-6. doi: 10.1093/nar/gku1335. Epub 2014 Dec 24. Nucleic Acids Res. 2015. PMID: 25541198 Free PMC article.

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