Cuppen E - Search Results

1

Analytical demands to use whole-genome sequencing in precision oncology.

Meggendorfer M, Jobanputra V, Wrzeszczynski KO, Roepman P, de Bruijn E, Cuppen E, Buttner R, Caldas C, Grimmond S, Mullighan CG, Elemento O, Rosenquist R, Schuh A, Haferlach T. Meggendorfer M, et al. Among authors: cuppen e. Semin Cancer Biol. 2022 Sep;84:16-22. doi: 10.1016/j.semcancer.2021.06.009. Epub 2021 Jun 10. Semin Cancer Biol. 2022. PMID: 34119643 Free article. Review.

2

Cloning and expression of new microRNAs from zebrafish.

Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH. Kloosterman WP, et al. Among authors: cuppen e. Nucleic Acids Res. 2006 May 12;34(9):2558-69. doi: 10.1093/nar/gkl278. Print 2006. Nucleic Acids Res. 2006. PMID: 16698962 Free PMC article.

3

Mismatch repair deficiency does not enhance ENU mutagenesis in the zebrafish germ line.

Feitsma H, de Bruijn E, van de Belt J, Nijman IJ, Cuppen E. Feitsma H, et al. Among authors: cuppen e. Mutagenesis. 2008 Jul;23(4):325-9. doi: 10.1093/mutage/gen019. Epub 2008 May 9. Mutagenesis. 2008. PMID: 18469325

4

Highly Efficient ENU Mutagenesis in Zebrafish.

de Bruijn E, Cuppen E, Feitsma H. de Bruijn E, et al. Among authors: cuppen e. Methods Mol Biol. 2009;546:3-12. doi: 10.1007/978-1-60327-977-2_1. Methods Mol Biol. 2009. PMID: 19378094

5

Accurate SNP and mutation detection by targeted custom microarray-based genomic enrichment of short-fragment sequencing libraries.

Mokry M, Feitsma H, Nijman IJ, de Bruijn E, van der Zaag PJ, Guryev V, Cuppen E. Mokry M, et al. Among authors: cuppen e. Nucleic Acids Res. 2010 Jun;38(10):e116. doi: 10.1093/nar/gkq072. Epub 2010 Feb 17. Nucleic Acids Res. 2010. PMID: 20164091 Free PMC article.

6

Small RNA expression and strain specificity in the rat.

Linsen SE, de Wit E, de Bruijn E, Cuppen E. Linsen SE, et al. Among authors: cuppen e. BMC Genomics. 2010 Apr 19;11:249. doi: 10.1186/1471-2164-11-249. BMC Genomics. 2010. PMID: 20403161 Free PMC article.

7

Mutation discovery by targeted genomic enrichment of multiplexed barcoded samples.

Nijman IJ, Mokry M, van Boxtel R, Toonen P, de Bruijn E, Cuppen E. Nijman IJ, et al. Among authors: cuppen e. Nat Methods. 2010 Nov;7(11):913-5. doi: 10.1038/nmeth.1516. Epub 2010 Oct 17. Nat Methods. 2010. PMID: 20953175

8

Efficient double fragmentation ChIP-seq provides nucleotide resolution protein-DNA binding profiles.

Mokry M, Hatzis P, de Bruijn E, Koster J, Versteeg R, Schuijers J, van de Wetering M, Guryev V, Clevers H, Cuppen E. Mokry M, et al. Among authors: cuppen e. PLoS One. 2010 Nov 30;5(11):e15092. doi: 10.1371/journal.pone.0015092. PLoS One. 2010. PMID: 21152096 Free PMC article.

9

Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline.

Kloosterman WP, Guryev V, van Roosmalen M, Duran KJ, de Bruijn E, Bakker SC, Letteboer T, van Nesselrooij B, Hochstenbach R, Poot M, Cuppen E. Kloosterman WP, et al. Among authors: cuppen e. Hum Mol Genet. 2011 May 15;20(10):1916-24. doi: 10.1093/hmg/ddr073. Epub 2011 Feb 24. Hum Mol Genet. 2011. PMID: 21349919

10

Multiplexed array-based and in-solution genomic enrichment for flexible and cost-effective targeted next-generation sequencing.

Harakalova M, Mokry M, Hrdlickova B, Renkens I, Duran K, van Roekel H, Lansu N, van Roosmalen M, de Bruijn E, Nijman IJ, Kloosterman WP, Cuppen E. Harakalova M, et al. Among authors: cuppen e. Nat Protoc. 2011 Nov 3;6(12):1870-86. doi: 10.1038/nprot.2011.396. Nat Protoc. 2011. PMID: 22051800

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