Wong WH - Search Results

1

MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting.

Zou M, Duren Z, Yuan Q, Li H, Hutchins AP, Wong WH, Wang Y. Zou M, et al. Among authors: wong wh. Brief Bioinform. 2021 Nov 5;22(6):bbab235. doi: 10.1093/bib/bbab235. Brief Bioinform. 2021. PMID: 34180954 Free PMC article.

2

Identifiability of isoform deconvolution from junction arrays and RNA-Seq.

Hiller D, Jiang H, Xu W, Wong WH. Hiller D, et al. Among authors: wong wh. Bioinformatics. 2009 Dec 1;25(23):3056-9. doi: 10.1093/bioinformatics/btp544. Epub 2009 Sep 16. Bioinformatics. 2009. PMID: 19762346 Free PMC article.

3

Simultaneous dimension reduction and adjustment for confounding variation.

Lin Z, Yang C, Zhu Y, Duchi J, Fu Y, Wang Y, Jiang B, Zamanighomi M, Xu X, Li M, Sestan N, Zhao H, Wong WH. Lin Z, et al. Among authors: wong wh. Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14662-14667. doi: 10.1073/pnas.1617317113. Epub 2016 Dec 7. Proc Natl Acad Sci U S A. 2016. PMID: 27930330 Free PMC article.

4

Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data.

Zamanighomi M, Lin Z, Wang Y, Jiang R, Wong WH. Zamanighomi M, et al. Among authors: wong wh. Nucleic Acids Res. 2017 Jun 2;45(10):5666-5677. doi: 10.1093/nar/gkx358. Nucleic Acids Res. 2017. PMID: 28472398 Free PMC article.

5

Modeling gene regulation from paired expression and chromatin accessibility data.

Duren Z, Chen X, Jiang R, Wang Y, Wong WH. Duren Z, et al. Among authors: wong wh. Proc Natl Acad Sci U S A. 2017 Jun 20;114(25):E4914-E4923. doi: 10.1073/pnas.1704553114. Epub 2017 Jun 2. Proc Natl Acad Sci U S A. 2017. PMID: 28576882 Free PMC article.

6

Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data.

Wang Y, Jiang R, Wong WH. Wang Y, et al. Among authors: wong wh. Natl Sci Rev. 2016 Jun;3(2):240-251. doi: 10.1093/nsr/nww025. Epub 2016 Apr 19. Natl Sci Rev. 2016. PMID: 28690910 Free PMC article.

7

Unsupervised clustering and epigenetic classification of single cells.

Zamanighomi M, Lin Z, Daley T, Chen X, Duren Z, Schep A, Greenleaf WJ, Wong WH. Zamanighomi M, et al. Among authors: wong wh. Nat Commun. 2018 Jun 20;9(1):2410. doi: 10.1038/s41467-018-04629-3. Nat Commun. 2018. PMID: 29925875 Free PMC article.

8

Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations.

Duren Z, Chen X, Zamanighomi M, Zeng W, Satpathy AT, Chang HY, Wang Y, Wong WH. Duren Z, et al. Among authors: wong wh. Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):7723-7728. doi: 10.1073/pnas.1805681115. Epub 2018 Jul 9. Proc Natl Acad Sci U S A. 2018. PMID: 29987051 Free PMC article.

9

TFAP2C- and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment.

Li L, Wang Y, Torkelson JL, Shankar G, Pattison JM, Zhen HH, Fang F, Duren Z, Xin J, Gaddam S, Melo SP, Piekos SN, Li J, Liaw EJ, Chen L, Li R, Wernig M, Wong WH, Chang HY, Oro AE. Li L, et al. Among authors: wong wh. Cell Stem Cell. 2019 Feb 7;24(2):271-284.e8. doi: 10.1016/j.stem.2018.12.012. Epub 2019 Jan 24. Cell Stem Cell. 2019. PMID: 30686763 Free PMC article.

10

DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data.

Zeng W, Chen X, Duren Z, Wang Y, Jiang R, Wong WH. Zeng W, et al. Among authors: wong wh. Nat Commun. 2019 Oct 10;10(1):4613. doi: 10.1038/s41467-019-12547-1. Nat Commun. 2019. PMID: 31601804 Free PMC article.

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