Eckert KA - Search Results

1

Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome.

Guiblet WM, DeGiorgio M, Cheng X, Chiaromonte F, Eckert KA, Huang YF, Makova KD. Guiblet WM, et al. Among authors: eckert ka. Genome Res. 2021 Jul;31(7):1136-1149. doi: 10.1101/gr.269589.120. Epub 2021 Jun 29. Genome Res. 2021. PMID: 34187812 Free PMC article.

2

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate.

Guiblet WM, Cremona MA, Cechova M, Harris RS, Kejnovská I, Kejnovsky E, Eckert K, Chiaromonte F, Makova KD. Guiblet WM, et al. Genome Res. 2018 Dec;28(12):1767-1778. doi: 10.1101/gr.241257.118. Epub 2018 Nov 6. Genome Res. 2018. PMID: 30401733 Free PMC article.

3

A matter of life or death: how microsatellites emerge in and vanish from the human genome.

Kelkar YD, Eckert KA, Chiaromonte F, Makova KD. Kelkar YD, et al. Among authors: eckert ka. Genome Res. 2011 Dec;21(12):2038-48. doi: 10.1101/gr.122937.111. Epub 2011 Oct 12. Genome Res. 2011. PMID: 21994250 Free PMC article.

4

A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome?

Fungtammasan A, Walsh E, Chiaromonte F, Eckert KA, Makova KD. Fungtammasan A, et al. Among authors: eckert ka. Genome Res. 2012 Jun;22(6):993-1005. doi: 10.1101/gr.134395.111. Epub 2012 Mar 28. Genome Res. 2012. PMID: 22456607 Free PMC article.

5

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.

Fungtammasan A, Ananda G, Hile SE, Su MS, Sun C, Harris R, Medvedev P, Eckert K, Makova KD. Fungtammasan A, et al. Genome Res. 2015 May;25(5):736-49. doi: 10.1101/gr.185892.114. Epub 2015 Mar 30. Genome Res. 2015. PMID: 25823460 Free PMC article.

6

What is a microsatellite: a computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats.

Kelkar YD, Strubczewski N, Hile SE, Chiaromonte F, Eckert KA, Makova KD. Kelkar YD, et al. Among authors: eckert ka. Genome Biol Evol. 2010;2:620-35. doi: 10.1093/gbe/evq046. Epub 2010 Jul 28. Genome Biol Evol. 2010. PMID: 20668018 Free PMC article.

7

Distinct mutational behaviors differentiate short tandem repeats from microsatellites in the human genome.

Ananda G, Walsh E, Jacob KD, Krasilnikova M, Eckert KA, Chiaromonte F, Makova KD. Ananda G, et al. Among authors: eckert ka. Genome Biol Evol. 2013;5(3):606-20. doi: 10.1093/gbe/evs116. Genome Biol Evol. 2013. PMID: 23241442 Free PMC article.

8

Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

Fungtammasan A, Walsh E, Chiaromonte F, Eckert KA, Makova KD. Fungtammasan A, et al. Among authors: eckert ka. Genome Res. 2016 Oct;26(10):1451. doi: 10.1101/gr.214460.116. Genome Res. 2016. PMID: 27698254 Free PMC article. No abstract available.

9

Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome.

Guiblet WM, Cremona MA, Harris RS, Chen D, Eckert KA, Chiaromonte F, Huang YF, Makova KD. Guiblet WM, et al. Among authors: eckert ka. Nucleic Acids Res. 2021 Feb 22;49(3):1497-1516. doi: 10.1093/nar/gkaa1269. Nucleic Acids Res. 2021. PMID: 33450015 Free PMC article.

10

Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes.

Ananda G, Hile SE, Breski A, Wang Y, Kelkar Y, Makova KD, Eckert KA. Ananda G, et al. Among authors: eckert ka. PLoS Genet. 2014 Jul 17;10(7):e1004498. doi: 10.1371/journal.pgen.1004498. eCollection 2014 Jul. PLoS Genet. 2014. PMID: 25033203 Free PMC article.

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