Pedersen BS - Search Results

1

Effective variant filtering and expected candidate variant yield in studies of rare human disease.

Pedersen BS, Brown JM, Dashnow H, Wallace AD, Velinder M, Tristani-Firouzi M, Schiffman JD, Tvrdik T, Mao R, Best DH, Bayrak-Toydemir P, Quinlan AR. Pedersen BS, et al. NPJ Genom Med. 2021 Jul 15;6(1):60. doi: 10.1038/s41525-021-00227-3. NPJ Genom Med. 2021. PMID: 34267211 Free PMC article.

2

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.

Dale RK, Pedersen BS, Quinlan AR. Dale RK, et al. Among authors: pedersen bs. Bioinformatics. 2011 Dec 15;27(24):3423-4. doi: 10.1093/bioinformatics/btr539. Epub 2011 Sep 23. Bioinformatics. 2011. PMID: 21949271 Free PMC article.

3

Vcfanno: fast, flexible annotation of genetic variants.

Pedersen BS, Layer RM, Quinlan AR. Pedersen BS, et al. Genome Biol. 2016 Jun 1;17(1):118. doi: 10.1186/s13059-016-0973-5. Genome Biol. 2016. PMID: 27250555 Free PMC article.

4

cyvcf2: fast, flexible variant analysis with Python.

Pedersen BS, Quinlan AR. Pedersen BS, et al. Bioinformatics. 2017 Jun 15;33(12):1867-1869. doi: 10.1093/bioinformatics/btx057. Bioinformatics. 2017. PMID: 28165109 Free PMC article.

5

Who's Who? Detecting and Resolving Sample Anomalies in Human DNA Sequencing Studies with Peddy.

Pedersen BS, Quinlan AR. Pedersen BS, et al. Am J Hum Genet. 2017 Mar 2;100(3):406-413. doi: 10.1016/j.ajhg.2017.01.017. Epub 2017 Feb 9. Am J Hum Genet. 2017. PMID: 28190455 Free PMC article.

6

Indexcov: fast coverage quality control for whole-genome sequencing.

Pedersen BS, Collins RL, Talkowski ME, Quinlan AR. Pedersen BS, et al. Gigascience. 2017 Nov 1;6(11):1-6. doi: 10.1093/gigascience/gix090. Gigascience. 2017. PMID: 29048539 Free PMC article.

7

Combating subclonal evolution of resistant cancer phenotypes.

Brady SW, McQuerry JA, Qiao Y, Piccolo SR, Shrestha G, Jenkins DF, Layer RM, Pedersen BS, Miller RH, Esch A, Selitsky SR, Parker JS, Anderson LA, Dalley BK, Factor RE, Reddy CB, Boltax JP, Li DY, Moos PJ, Gray JW, Heiser LM, Buys SS, Cohen AL, Johnson WE, Quinlan AR, Marth G, Werner TL, Bild AH. Brady SW, et al. Among authors: pedersen bs. Nat Commun. 2017 Nov 1;8(1):1231. doi: 10.1038/s41467-017-01174-3. Nat Commun. 2017. PMID: 29093439 Free PMC article.

8

Mosdepth: quick coverage calculation for genomes and exomes.

Pedersen BS, Quinlan AR. Pedersen BS, et al. Bioinformatics. 2018 Mar 1;34(5):867-868. doi: 10.1093/bioinformatics/btx699. Bioinformatics. 2018. PMID: 29096012 Free PMC article.

9

GIGGLE: a search engine for large-scale integrated genome analysis.

Layer RM, Pedersen BS, DiSera T, Marth GT, Gertz J, Quinlan AR. Layer RM, et al. Among authors: pedersen bs. Nat Methods. 2018 Feb;15(2):123-126. doi: 10.1038/nmeth.4556. Epub 2018 Jan 8. Nat Methods. 2018. PMID: 29309061 Free PMC article.

10

Publisher Correction: Combating subclonal evolution of resistant cancer phenotypes.

Brady SW, McQuerry JA, Qiao Y, Piccolo SR, Shrestha G, Jenkins DF, Layer RM, Pedersen BS, Miller RH, Esch A, Selitsky SR, Parker JS, Anderson LA, Dalley BK, Factor RE, Reddy CB, Boltax JP, Li DY, Moos PJ, Gray JW, Heiser LM, Buys SS, Cohen AL, Johnson WE, Quinlan AR, Marth G, Werner TL, Bild AH. Brady SW, et al. Among authors: pedersen bs. Nat Commun. 2018 Feb 5;9(1):572. doi: 10.1038/s41467-017-02383-6. Nat Commun. 2018. PMID: 29402882 Free PMC article.

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