Yang JYH - Search Results

1

A hierarchical approach to removal of unwanted variation for large-scale metabolomics data.

Kim T, Tang O, Vernon ST, Kott KA, Koay YC, Park J, James DE, Grieve SM, Speed TP, Yang P, Figtree GA, O'Sullivan JF, Yang JYH. Kim T, et al. Among authors: yang jyh, yang p. Nat Commun. 2021 Aug 17;12(1):4992. doi: 10.1038/s41467-021-25210-5. Nat Commun. 2021. PMID: 34404777 Free PMC article.

2

A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data.

Wang P, Yang P, Arthur J, Yang JY. Wang P, et al. Bioinformatics. 2010 Sep 15;26(18):2242-9. doi: 10.1093/bioinformatics/btq403. Epub 2010 Jul 13. Bioinformatics. 2010. PMID: 20628072

3

Re-fraction: a machine learning approach for deterministic identification of protein homologues and splice variants in large-scale MS-based proteomics.

Yang P, Humphrey SJ, Fazakerley DJ, Prior MJ, Yang G, James DE, Yang JY. Yang P, et al. J Proteome Res. 2012 May 4;11(5):3035-45. doi: 10.1021/pr300072j. Epub 2012 Mar 30. J Proteome Res. 2012. PMID: 22428558

4

OCAP: an open comprehensive analysis pipeline for iTRAQ.

Wang P, Yang P, Yang JY. Wang P, et al. Bioinformatics. 2012 May 15;28(10):1404-5. doi: 10.1093/bioinformatics/bts150. Epub 2012 Mar 29. Bioinformatics. 2012. PMID: 22467906

5

ISL1 regulates peroxisome proliferator-activated receptor γ activation and early adipogenesis via bone morphogenetic protein 4-dependent and -independent mechanisms.

Ma X, Yang P, Kaplan WH, Lee BH, Wu LE, Yang JY, Yasunaga M, Sato K, Chisholm DJ, James DE. Ma X, et al. Mol Cell Biol. 2014 Oct 1;34(19):3607-17. doi: 10.1128/MCB.00583-14. Epub 2014 Jul 21. Mol Cell Biol. 2014. PMID: 25047837 Free PMC article.

6

Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data.

Yang P, Zheng X, Jayaswal V, Hu G, Yang JY, Jothi R. Yang P, et al. PLoS Comput Biol. 2015 Aug 7;11(8):e1004403. doi: 10.1371/journal.pcbi.1004403. eCollection 2015 Aug. PLoS Comput Biol. 2015. PMID: 26252020 Free PMC article.

7

PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications.

Chaudhuri R, Sadrieh A, Hoffman NJ, Parker BL, Humphrey SJ, Stöckli J, Hill AP, James DE, Yang JY. Chaudhuri R, et al. BMC Genomics. 2015 Aug 19;16(1):617. doi: 10.1186/s12864-015-1820-x. BMC Genomics. 2015. PMID: 26283093 Free PMC article.

8

KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis.

Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang JY. Yang P, et al. Proteomics. 2016 Jul;16(13):1868-71. doi: 10.1002/pmic.201600068. Epub 2016 May 27. Proteomics. 2016. PMID: 27145998 Free PMC article.

9

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

Yang P, Oldfield A, Kim T, Yang A, Yang JYH, Ho JWK. Yang P, et al. Among authors: yang jyh, yang a. Bioinformatics. 2017 Jul 1;33(13):1916-1920. doi: 10.1093/bioinformatics/btx092. Bioinformatics. 2017. PMID: 28203701 Free PMC article.

10

Cross-species gene expression analysis identifies a novel set of genes implicated in human insulin sensitivity.

Chaudhuri R, Khoo PS, Tonks K, Junutula JR, Kolumam G, Modrusan Z, Samocha-Bonet D, Meoli CC, Hocking S, Fazakerley DJ, Stöckli J, Hoehn KL, Greenfield JR, Yang JYH, James DE. Chaudhuri R, et al. Among authors: yang jyh. NPJ Syst Biol Appl. 2015 Nov 12;1:15010. doi: 10.1038/npjsba.2015.10. eCollection 2015. NPJ Syst Biol Appl. 2015. PMID: 28725461 Free PMC article.

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